Hu Y Y - OmicsDI

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Unknown (49127)
Proteomics (969)
Transcriptomics (494)
Genomics (98)
Metabolomics (97)
Models (2)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (418)
Mus musculus (207)
Arabidopsis thaliana (33)
Saccharomyces cerevisiae (26)
Rattus norvegicus (24)
Drosophila melanogaster (15)
Gallus gallus (11)
Escherichia coli (9)
Ralstonia solanacearum (8)
Schizosaccharomyces pombe (7)
Oryza sativa (7)
Bos taurus (5)
Tetrahymena thermophila (4)
Macaca mulatta (4)
Danio rerio (4)
Camponotus floridanus (3)
Urocitellus parryii (3)
Solenopsis invicta (3)
Streptococcus pneumoniae (3)
Harpegnathos saltator (2)
Trichoderma reesei QM6a (2)
Oryza sativa Indica Group (2)
Oryza sativa Japonica Group (2)
Sus scrofa (2)
Rattus (1)
Acromyrmex echinatior (1)
Nannochloropsis oceanica (1)
Bos grunniens (1)
Brassica oleracea (1)
Musa acuminata (1)

Organisms

Bahaba taipingensis (5)
Homo sapiens (3)
Mus musculus (2)
Streptomyces coelicolor (1)
Saccharomyces cerevisiae (1)

Repository

pride (615)
biostudies-arrayexpress (538)
iProX (282)
MetaboLights (93)
EGA (37)
jPOST (32)
MassIVE (29)
ENA (14)
PAXDB (6)
PeptideAtlas (5)
GNPS (4)
geo (3)
BioModels (2)
NODE (2)
GPMDB (1)

Tissue

Cell culture (171)
Epithelial cell (39)
Leaf (22)
Brain (21)
Blood serum (20)
Liver (20)
Lung (17)
Blood plasma (16)
Hepatocyte (14)
Blood (13)
Permanent cell line cell (11)
Skin (11)
Stem cell (11)
Testis (11)
T cell (10)
Embryonic stem cell (9)
Plant cell (9)
Whole body (9)
Heart (8)
Kidney (7)
Macrophage (7)
Bone marrow (6)
Cell suspension culture (6)
Cerebrospinal fluid (6)
Fibroblast (6)
Blood cell (5)
Liver (3)
Cell line (1)
Splenic B cells (1)
Others (1)

Disease

Disease free (14)
Breast cancer (12)
Colon cancer (9)
Acute leukemia (7)
Non-small cell lung carcinoma (5)
Cardiovascular system disease (4)
Cervix carcinoma (4)
Melanoma (4)
Pancreatic cancer (4)
Normal (3)
Brain cancer (3)
Hepatocellular carcinoma (3)
Lung cancer (3)
Prostate adenocarcinoma (3)
Ovarian tumor (2)
Alzheimer's disease (2)
Brain glioblastoma multiforme (2)
COVID-19 (2)
Infected (1)
Mock infected (1)
Porphyria NOS (1)
Infected (1)
Invasive lobular carcinoma (1)
IBDV infected (1)
Locally advanced rectal cancer (1)
Burkitt lymphoma (1)
Glioblastoma (1)
Adenocarcinoma (1)
Neurofibromatosis type 1 (1)
Not Available (1)

Technology Type

Mass Spectrometry (615)
Shotgun proteomics (300)
Bottom-up proteomics (111)
Mass spectrometry (82)
Data-dependent acquisition (61)
Affinity purification coupled with mass spectrometry proteomics (55)
Gel-based experiment (41)
Data-independent acquisition (35)
Top-down proteomics (21)
SWATH MS (18)
Proteogenomics (12)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Mass spectrometry assay (7)
All-ion fragmentation (7)
NMR spectroscopy (5)
Mass spectrometry imaging (5)
SRM/MRM (5)
MSE (4)
DiaPASEF (3)
HDMSE (3)
Illumina HiSeq 2000 (2)
Affinity proteomics (2)
Glycoproteomics (2)
Immunopeptidomics (2)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 4000 (ILLUMINA) (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Affymetrix 6.0 (1)
NMR spectroscopy assay (1)

Instrument Platform

Illumina NovaSeq 6000 (12)
Illumina HiSeq 2000 (11)
Q Exactive (9)
Orbitrap Fusion Lumos (7)
NextSeq 500 (6)
GenePix Professional 4200A [Axon Instruments] (4)
LTQ Orbitrap Velos (4)
Q Exactive HF (4)
Illumina HiSeq 2500 (3)
ScanArray 5000 [PerkinElmer] (2)
Generation III Scanner (2)
Illumina MiSeq (2)
LTQ FT (2)
MaXis (2)
BD FACS Aria II (1)
PromethION (1)
MA900, Sony (1)
10x Chromium Controller (1)
DNA 7500 Bioanalyzer Chips (1)
Axon Instruments GenePix 4000B scanner (1)
Not applicable (1)
GeneChip Scanner 3000 [Affymetrix] (1)
GenePix 4000A [Axon Instruments] (1)
Axon- GenePix4000B (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Ion Torrent PGM (1)
NextSeq 550 (1)
GC/MS Agilent MSD5977B (1)
Instrument (1)

Publication Date

2025 (167)
2022 (154)
2023 (151)
2024 (150)
2021 (122)
2026 (103)
2014 (91)
2010 (85)
2012 (74)
2020 (73)
2013 (63)
2019 (59)
2016 (55)
2018 (50)
2015 (48)
2011 (36)
2008 (30)
2009 (24)
2017 (21)
2007 (16)
2005 (14)
2006 (9)
2004 (6)
2003 (1)

UNIPROT ID/AC

5691.AAQ15626 (2)
5691.AAQ15709 (2)
5691.AAQ16021 (2)
5691.AAZ10366 (2)
5691.AAZ10412 (2)
5691.AAZ10463 (2)
5691.AAZ10464 (2)
5691.AAZ10465 (2)
5691.AAZ10466 (2)
5691.AAZ10510 (2)
5691.AAZ10511 (2)
5691.AAZ10512 (2)
5691.AAZ10771 (2)
5691.AAZ10942 (2)
5691.AAZ10991 (2)
5691.AAZ11075 (2)
5691.AAZ11276 (2)
5691.AAZ11337 (2)
5691.AAZ11338 (2)
5691.AAZ11340 (2)
5691.AAZ11529 (2)
5691.AAZ11530 (2)
5691.AAZ11531 (2)
5691.AAZ11532 (2)
5691.AAZ11533 (2)
5691.AAZ11534 (2)
5691.AAZ11535 (2)
5691.AAZ11536 (2)
5691.AAZ11537 (2)
5691.AAZ11660 (2)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:15741 (33)
CHEBI:16704 (31)
CHEBI:30769 (29)
CHEBI:16708 (27)
CHEBI:30915 (27)
CHEBI:17568 (26)
CHEBI:15354 (26)
CHEBI:17596 (26)
CHEBI:17750 (25)
CHEBI:17368 (25)
CHEBI:15428 (24)
CHEBI:15891 (24)
CHEBI:18012 (24)
CHEBI:16811 (23)
CHEBI:16750 (23)
CHEBI:16610 (23)
CHEBI:16919 (23)
CHEBI:16040 (22)
CHEBI:6650 (22)
CHEBI:17154 (21)
CHEBI:16335 (21)
CHEBI:7916 (21)
CHEBI:15971 (21)
CHEBI:16027 (21)
CHEBI:16737 (21)
CHEBI:17821 (20)
CHEBI:37024 (20)
CHEBI:16196 (20)
CHEBI:17509 (20)
CHEBI:16467 (20)

Metabolite Name

Uridine (21)
Adenine (19)
Hypoxanthine (17)
Xanthine (15)
Uracil (14)
Betaine (14)
Choline (14)
Taurine (14)
Citric acid (14)
Creatinine (14)
Hippuric acid (14)
L-Histidine (13)
Methionine (13)
Adenosine (13)
Guanosine (13)
Creatine (13)
Inosine (13)
Cholic acid (12)
Cytosine (12)
Sucrose (12)
L-Tyrosine (12)
Thymine (11)
L-Arginine (11)
Spermidine (11)
Cytidine (11)
Glycine (10)
Valine (10)
L-Proline (10)
Taurocholic acid (10)
Stearic acid (10)

First Public Date

2026 (6)
2014 (3)
2025 (1)
2024 (1)
2023 (1)
2018 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
PROBE (7)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (4)
Guangzhou Medical University (4)
Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (4)
BGI Research (3)
Central South University (3)
Huazhong Agricultural University (3)
JiNan (3)
SIMM (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
Tianjin Medical University General Hospital (3)
University at buffalo, SUNY (3)
Yale Cancer Biology Institute (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
Abbvie Bioresearch Center (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Children's Hospital of Nanjing Medical University (2)
China Agricultural University (2)
College of Biological Engineering, Henan University of Technology, Zhengzhou, China (2)
College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, China (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (2)
Department of Biochemistry UT Southwestern Medical Center (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (2)
Department of Chemistry, Washington University in Saint Louis (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)

IsPrivate

False (2)

Model Flag

Non Miriam (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
57.021464 (1)
6-dioxaoctanediamine derivatized cysteine (1)
6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (276)
RNA-seq of coding RNA (92)
ChIP-seq (34)
RNA-seq of non coding RNA (26)
Other (20)
Comparative genomic hybridization by array (17)
Unknown experiment type (15)
ChIP-chip by tiling array (10)
Methylation profiling by high throughput sequencing (10)
Methylation profiling by array (7)
RNA-seq of coding RNA from single cells (7)
Cell line - High-throughput sequencing (3)
Transcription profiling by RT-PCR (3)
Transcription profiling by SAGE (2)
Genotyping by array (2)
ATAC-seq (2)
RNA-seq of total RNA (2)
One-color microarray (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2025 (7972)
2022 (6916)
2023 (6137)
2024 (6102)
2021 (5155)
2020 (3772)
2019 (2663)
2018 (2229)
2017 (1847)
2016 (1578)
2015 (1231)
2026 (1028)
2014 (893)
2013 (578)
2012 (492)
2011 (322)
2010 (261)
2009 (164)
2008 (118)
2007 (62)
2006 (46)
2005 (30)
2004 (23)
2002 (13)
2003 (12)
2001 (9)
2000 (7)
1999 (2)
1997 (2)
1998 (1)

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The transcriptional modulator H2AFY marks Huntington's disease activity in men and mice

To accelerate the development of disease-modifying therapeutics for Huntington’s disease (HD), a dynamic biomarker of disease activity and treatment response is critically needed. Venous cellular whole blood from 8 patients with Huntington's disease (HD) and 6 control subjects were collected in PAXg...

ORGANISM(S): Homo sapiens

2011-09-01 | E-GEOD-24250 | biostudies-arrayexpress

Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting

The ring-shaped cohesin complex links sister chromatids until their timely segregation during mitosis. Cohesin is enriched at centromeres, where it provides the cohesive counter-force to bi-polar tension produced by the mitotic spindle. As a consequence of spindle tension, centromeric sequences tran...

ORGANISM(S): Saccharomyces cerevisiae

2007-09-29 | E-GEOD-8661 | biostudies-arrayexpress

Hayashi1999_NOSynth_Phospho

This model features the phosphorylation of rat brain neuronal NOS expressed in E. coli or Sf9 cells, which leads to a decrease in Vmax of the phosphorylated enzyme, with little change of both the Km for L-arginine and Kact for CaM. This is based on Hayashi Y. et al. J Biol Chem. (1999) 274(29):20597...

2005-01-01 | MODEL4780784080 | BioModels

Mutation Rate Variability across Human Y-Chromosome Haplogroups.

Not available

S-EPMC7947773 | biostudies-literature

Antibacterial activity and mechanism of flavonoids from Chimonanthus salicifolius S. Y. Hu. and its transcriptome analysis against Staphylococcus aureus.

Not available

S-EPMC9871464 | biostudies-literature

Stuberosum - Leaf, sequence+MS2 intensity (Stareetal,bmcgenomics2015)

abundance based on sequence+MS2 intensity, Interaction consistency score: 3.4, Coverage: 1

ORGANISM(S): 4113

2015-00-00 | 4093549508 | PAXDB

PRAMEY: A Bovid-Specific Y-Chromosome Multicopy Gene Is Highly Related to Postnatal Testicular Growth in Hu Sheep.