Hughes Stephen S

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Unknown (29)
Genomics (10)
Transcriptomics (9)
Genomic (2)
Proteomics (2)

Organisms

Homo sapiens (12)
Mus musculus (6)
Schizophyllum commune H4-8 (2)
Mycobacterium tuberculosis SP7 (2)
Oryza sativa Japonica Group (2)
Candidatus Endoriftia persephonae (2)
Mycobacterium tuberculosis SP10 (2)
Mycobacterium tuberculosis SP13 (2)
Mycobacterium tuberculosis SP22 (2)
Chlamydomonas reinhardtii (2)
Lama (2)
Pyricularia oryzae P131 (2)
Enterococcus mundtii CRL35 (2)
Oncorhynchus tshawytscha (2)
Pseudomonas canadensis (2)
Strongylocentrotus purpuratus (2)
Influenza A virus (A/California/04/2009(H1N1)) (2)
Homo (2)
Pseudomonas aeruginosa PAO1H2O (2)
Human alphaherpesvirus 1 strain 17 (2)
Quercus petraea (2)
Canis lupus (2)
Mycobacterium tuberculosis SP1 (2)
Marchantia polymorpha subsp. ruderalis (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Methylocystis sp. (2)
Exiguobacterium sp. SH31 (2)
Palaemonetes sp. common grass shrimp associated circular virus (2)
Amaranthus tricolor (2)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (13)
EGA (6)
dbGaP (2)
pride (2)

Tissue

Permanent cell line cell (1)
Cell culture (1)

Technology Type

Mass Spectrometry (2)
Illumina HiSeq 2000 (1)
Data-dependent acquisition (1)
Bottom-up proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

IScan (2)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)

Publication Date

2026 (3)
2013 (3)
2010 (3)
2019 (2)
2021 (1)
2017 (1)
2015 (1)
2011 (1)

Study type

ChIP-seq (4)
Transcription profiling by array (3)
Methylation profiling by array (2)
RNA-seq of coding RNA (2)
Animal - High-throughput sequencing (1)
Other (1)

Release Date

2019 (5)
2021 (4)
2013 (4)
2010 (4)
2024 (4)
2023 (4)
2026 (3)
2025 (3)
2014 (3)
2015 (2)
2011 (2)
2017 (1)
2022 (1)
2018 (1)
2016 (1)

Lab affiliation

Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA Division of Genetics, Brigham & Women's Hospital, Boston, MA 02115, USA Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
Department of Genetics, Harvard Medical School, Boston, MA 021152 Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA0211 Department of Cell Biology, Harvard Medical School, Boston, MA 02115 Howard Hughes Medical Institute, Boston, MA 02115 (1)

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Outcomes by tumor subtype and treatment pattern in women with small, node-negative breast cancer: a multi-institutional study.

Not available

S-EPMC4076026 | biostudies-literature

The heterochronic LIN-14 protein is a BEN domain transcription factor.

Not available

S-EPMC10080584 | biostudies-literature

Genome-wide mapping of in vivo SCL/DNA interactions in erythroid cells

We have previously proposed two distinct molecular mechanisms by which SCL binds its targets in hematopoiesis; either by direct contact with specific DNA sequences or by indirect recruitment through interaction with other proteins. We have established that direct DNA binding is the major non-redund...

ORGANISM(S): Mus musculus

2010-05-18 | E-GEOD-18720 | biostudies-arrayexpress

Oncolytic Reovirus mediates innate-driven SARS-CoV-2 elimination in the absence of cell toxicity

Interplay between type I interferon (IFN) driven innate responses and viral antagonism strongly influences SARS-CoV-2 transmission and the COVID-19 disease course. Hence, variant adaptation includes diminished induction of IFN stimulated genes (ISG) and/or evasion of their effector functions. Exogen...

ORGANISM(S): Homo sapiens

2026-04-15 | E-MTAB-16855 | biostudies-arrayexpress

Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq.

Not available

S-EPMC4259842 | biostudies-literature

H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation [ChIP-Seq]

Histone modifications regulate chromatin-dependent processes, yet the mechanisms by which they contribute to specific outcomes remain unclear. H3K4me3 is a prominent histone mark that is associated with active genes and promotes transcription through interactions with effector proteins that include ...

ORGANISM(S): Homo sapiens

2013-03-02 | E-GEOD-43539 | biostudies-arrayexpress

H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation [HIT-Seq]

ORGANISM(S): Mus musculus

2013-03-02 | E-GEOD-43540 | biostudies-arrayexpress

H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation [Illumina BeadArray]

ORGANISM(S): Homo sapiens

2013-03-02 | E-GEOD-43541 | biostudies-arrayexpress

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars.

Not available

S-EPMC3657823 | biostudies-literature

Targeting Ras-, Rho-, and Rab-family GTPases via a conserved cryptic pocket.