Human papillomavirus

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Unknown (6638)
Genomics (416)
Transcriptomics (305)
Proteomics (49)
Other (16)
Clinical (7)
Methylation profiling (5)
Metabolomics (4)
Genomic (2)

Organisms

Homo sapiens (357)
Mus musculus (30)
Human papillomavirus (8)
Human papillomavirus 16 (5)
human gammaherpesvirus 4 (5)
human papillomavirus 31 (3)
Human gammaherpesvirus 8 (3)
human papillomavirus 18 (2)
Human alphaherpesvirus 2 (2)
Human alphaherpesvirus 1 (2)
synthetic construct (2)
Cervus nippon (1)
Equus caballus (1)
Canis lupus familiaris (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
human papillomavirus 39 (1)
Alphapapillomavirus 13 (1)
human papillomavirus 33 (1)
human papillomavirus 11 (1)
Ureaplasma (1)
Human papillomavirus type 6 (1)
human papillomavirus 58 (1)
human papillomavirus 35 (1)
Mycoplasmoides genitalium (1)
Metamycoplasma hominis (1)
Simian-Human immunodeficiency virus (1)
human papillomavirus 72 (1)
cucumber mosaic cucumovirus (1)
Human betaherpesvirus 7 (1)

Organisms

Homo sapiens (171)
Mus musculus (17)
Human papillomavirus (14)
Human papillomavirus 16 (6)
human vaginal metagenome (5)
Papillomaviridae (2)
Gammapapillomavirus 8 (1)
Gammapapillomavirus 6 (1)
Betapapillomavirus 1 (1)
Betapapillomavirus 2 (1)
Betapapillomavirus 3 (1)
Alphapapillomavirus 10 (1)
Human papillomavirus sp. (1)
Staphylococcus haemolyticus (1)
human skin metagenome (1)
Bacteria (1)
Capra hircus (1)
unidentified (1)

Repository

ENA (342)
biostudies-arrayexpress (189)
geo (175)
pride (36)
EGA (35)
MassIVE (10)
MetaboLights (4)
dbGaP (2)
iProX (2)
EVA (1)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (13)
Keratinocyte (8)
Epithelial cell (7)
Skin (3)
Tonsil (3)
Blood serum (2)
Epithelial cell of cervix (2)
T cell (2)
Tongue (2)
Bone marrow (1)
Head and neck cancer cell (1)
Head and neck squamous cell carcinoma cell (1)
Oropharyngeal squamous cell carcinoma cell (1)
Palate (1)
Peripheral blood mononuclear cell (1)
Permanent cell line cell (1)

Disease

Cervix carcinoma (5)
Human papillomavirus infectious disease (4)
Cervical cancer (3)
Skin cancer (3)
Normal (2)
Head and neck squamous cell carcinoma (2)
Human immunodeficiency virus infectious disease (2)
Oropharynx cancer (2)
Squamous cell carcinoma (2)
Integrated HPV16 only (1)
HPV positive (1)
HIV Infections (1)
Uterine Cervical Neoplasms (1)
Carcinoma (1)
Colonic Neoplasms (1)
Colorectal Cancer (1)
Neoplasms (1)
Colorectal Neoplasms (1)
Not Available (1)
Disease free (1)
Osteosarcoma (1)
Papillary renal cell carcinoma (1)
Pharynx squamous cell carcinoma (1)
Tonsil squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (8)
Bottom-up proteomics (8)
Mass spectrometry (4)
Data-dependent acquisition (4)
Gel-based experiment (3)
SWATH MS (3)
Data-independent acquisition (2)
MSE (2)
NextSeq 500 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2500, ILLUMINA (1)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Proteogenomics (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (9)
Illumina HiSeq 2500 (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Orbitrap Eclipse (2)
Orbitrap Fusion Lumos (2)
DNBSEQ-G50 (1)
Illumina BeadArray Reader (part of Illumina BeadStation 500 (1)
ISCAN (1)
IScan Illumina (1)
The TLDA cards were analyzed on the Applied Biosystems 7900HT Real-Time PCR System. (1)
Illumina HiSeq X (1)
NextSeq 550 (1)
Instrument (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion (1)
Q Exactive (1)
TripleTOF 5600+ (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2014 (38)
2025 (35)
2013 (35)
2022 (26)
2026 (25)
2016 (25)
2023 (24)
2021 (24)
2015 (23)
2024 (22)
2018 (18)
2012 (18)
2011 (18)
2017 (16)
2008 (14)
2009 (13)
2010 (12)
2020 (11)
2019 (10)
2007 (6)
2005 (3)
2006 (1)

CHEBI ID

CHEBI:17822 (2)
CHEBI:16680 (2)
CHEBI:17858 (2)
CHEBI:16856 (2)
CHEBI:15676 (2)
CHEBI:16708 (2)
CHEBI:16742 (2)
CHEBI:17724 (2)
CHEBI:17562 (2)
CHEBI:16750 (2)
CHEBI:15746 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:17154 (2)
CHEBI:17929 (2)
CHEBI:15727 (2)
CHEBI:84058 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:15940 (2)
CHEBI:17012 (2)
CHEBI:16704 (2)
CHEBI:18012 (2)
CHEBI:32816 (2)
CHEBI:16919 (2)
CHEBI:15354 (2)
CHEBI:17596 (2)
CHEBI:17368 (2)
CHEBI:30769 (2)
CHEBI:50531 (1)

Metabolite Name

Citicoline (2)
Cytidine monophosphate (2)
4-Hydroxyproline (2)
IMP (2)
Argininosuccinic acid (2)
Glutathione (2)
Gamma-L-Glutamyl-L-2-aminobutyrate (2)
Guanosine monophosphate (2)
Guanosine (2)
Uridine (2)
Creatinine (2)
Inosine (2)
N-methylnicotinate (1)
N(alpha)-gamma-L-glutamylhistamine (1)
O-carbamoyl-L-serine (1)
N(5)-hydroxy-L-ornithine (1)
1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside (1)
3-dehydrosphingosine (1)
(2-aminoethyl)phosphonic acid (1)
Adenosine 5'-(hexahydrogen pentaphosphate) (1)
S-adenosylmethioninamine (1)
(R)-carnitinamide (1)
Pyrimidine nucleoside (1)
N(1)-aminoaminopropylagmatine (1)
Carboxyspermidine (1)
S-inosyl-L-homocysteine (1)
2,4-diacetamido-2,4,6-trideoxy-alpha-D-mannopyranose (1)
(2S,3R)-capreomycidine (1)
Pseudouridine 5'-phosphate (1)
Itaconyl-CoA (1)

First Public Date

2014 (46)
2025 (45)
2026 (40)
2021 (29)
2024 (28)
2018 (25)
2022 (24)
2017 (23)
2023 (20)
2020 (19)
2019 (14)
2015 (13)
2013 (13)
2016 (3)

Classification

viruses (29)

Modification

N6 (1)

Study status

Completed (4)
Active, not recruiting (1)
Not provided (1)
Recruiting (1)

Study type

Transcription profiling by array (98)
Methylation profiling by array (22)
RNA-seq of coding RNA (14)
Comparative genomic hybridization by array (10)
Genotyping by array (8)
MicroRNA profiling by array (5)
Interventional (5)
DNA-seq (4)
RNA-seq of coding RNA from single cells (4)
Unknown experiment type (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
ChIP-seq (2)
Transcription profiling by SAGE (1)
Human - Methylation microarray (1)
ChIP-chip by tiling array (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
RIP-seq (1)
Other (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Observational patient registry (1)
Observational (1)

Release Date

2025 (746)
2022 (726)
2023 (698)
2021 (678)
2024 (550)
2020 (535)
2019 (457)
2018 (424)
2017 (328)
2016 (323)
2014 (278)
2015 (228)
2013 (177)
2012 (125)
2011 (116)
2026 (92)
2010 (81)
2009 (64)
2008 (55)
2007 (28)
2006 (24)
2005 (18)
2003 (17)
2004 (16)
2000 (12)
2002 (10)
2001 (9)
1999 (8)
1998 (3)
1997 (1)

Lab affiliation

1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
Institute of Virology, University of Cologne Medical Faculty and University Hospital Cologne, Cologne, Germany (2)
Åbo Akademi University, Faculty of Science and Engineering, Finland (2)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
Additional Professor, Department of Medical Oncology (Lab.), Dr B.R.A.I.R.C.H., AIIMS, New Delhi (1)
Additional Professor, Deptt. of Medical Oncology (Lab), Dr BRAIRCH, AIIMS, New Delhi (1)
Associate Professor, Department of Oncology, Institute of Clinical Sciences, Sahlgrenska Academy at the University of Gothenburg, Blå Stråket 2, SE-41345, Göteborg, Sweden. (1)
Baker Heart and Diabetes Inst. (1)
Biotechnology and Cell Signaling (CNRS/Université de Strasbourg, UMR 7242), Ecole Supérieure de Biotechnologie de Strasbourg, 300 Boulevard Sébastien Brant, 67400 Illkirch, France. (1)
Biotechnology and Cell Signaling, UMR 7242, Strasbourg, France (1)
Cancer Research Institute, School of Basic Medical Science, Central South University (1)
DKFZ F130 Division of Immunotherapy and Immunoprevention (1)
Department of Biochemistry, Western University, Canada (1)
Department of Biology University of Konstanz Germany (1)
Department of Biology, University of Konstanz, Germany (1)
Department of Otorhinolaryngology and Head & Neck Surgery, University Medical Center Ulm, Head and Neck Cancer Center of the Comprehensive Cancer Center Ulm, Ulm, Germany (1)
Director, Advanced Clinical Biosystems Research Institute (1)
Division of Viral Transformation Mechanisms, German Cancer Research Center (DKFZ), Heidelberg, Germany (1)
European Institute of Oncology, Milan, Italy (1)
Felix Hoppe-Seyler, Molecular Therapy of Virus-Associated Cancers, German Cancer Research Center (DKFZ), D-69120 Heidelberg, Germany (1)
Genecology Research Centre, University of the Sunshine Coast (1)
Head of Mass Spectrometry Laboratory, Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil. (1)
IMP - Research Institute of Molecular Pathology Campus-Vienna-Biocenter 1 1030 Vienna Austria (1)
Institute for Quantitative and Computational Biosciences (QCBio), University of California, Los Angeles, USA Department of Microbiology, Immunology, and Molecular Genetics (MIMG), University of California, Los Angeles, LA, USA Molecular Biology Institute, University of California, Los Angeles, USA (1)
Laboratory MIVEGEC UMR5290 (CNRS IRD University Montpellier), French National Center for Scientific Research (CNRS), Montpellier, France (1)
Max Planck Institute for Moleclar Biomedicine Bioanalyticyl Mass Spectrometry Unit Röntgenstr. 20 48149 Münster Germany (1)
Molecular Therapy of Virus-Associated Cancers, German Cancer Research Center (DKFZ), D-69120 Heidelberg, Germany (1)
Molecular Therapy of Virus-Associated Cancers, German Cancer Research Center (DKFZ), Heidelberg, Germany. (1)
ProCan, Children’s Medical Research Institute, The University of Sydney, Westmead, NSW, Australia (1)
Proteomics and Metabolomics Research Program, Basic Research Department, Children’s Cancer Hospital, Cairo, Egypt. (1)

Location

United States (5)
Guam (1)
China (1)
United Kingdom (1)

Keyword

Increased Screening Uptake (1)
Community Health Worker (1)
Medically Underserved (1)
Bintrafusp Alfa M7824 (1)
NHS-IL12 M9241 (1)
PD-1(L1) (1)
Entinostat (1)
Environmental barriers to cancer screening (1)
Person-level barriers to cancer screening (1)
Insurance Coverage (1)
Insurance Continuity (1)
Ipilimumab (1)
Nivolumab (1)
Immunotherapy (1)

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MicroRNA sequencing and Novel HPV miRNA discovery in HPV cell lines and human tissue samples

Human papillomaviruses (HPV) preferentially infect keratinocytes of mucous membranes or skin and cause numerous benign and malignant lesions at different anatomical locations. A number of DNA viruses encode their own miRNAs as well. To date, no studies have been able to validate viral miRNAs in papi...

ORGANISM(S): Homo sapiens

2013-08-18 | E-GEOD-42380 | biostudies-arrayexpress

Transcription profiling of human HPV-immortalized keratinocytes

To identify early processes in carcinogenesis, we used an in vitro model, based on the initiating event in cervical cancer, human papillomavirus (HPV) transformation of keratinocytes. We compared gene expression in primary keratinocytes (K) and HPV16-transformed keratinocytes from early (E) and late...

ORGANISM(S): Homo sapiens

2009-05-02 | E-GEOD-15156 | biostudies-arrayexpress

Human papillomavirus

Human papillomavirus Raw sequence reads

PRJNA393628 | ENA

Copy Number Alterations in HNSCC with or without Oncogene Expressing Human Papillomavirus

Oncogene expressing human papillomavirus type 16 (HPV16) is found in a subset of head and neck squamous cell carcinomas (HNSCC). HPV16 drives carcinogenesis by inactivating p53 and pRb with the viral oncoproteins E6 and E7, reflected by a low level of mutations in TP53 and allelic loss at 3p, 9p and...

ORGANISM(S): Homo sapiens

2009-05-26 | E-GEOD-11931 | biostudies-arrayexpress

Human papillomavirus

Human papillomavirus genotyping

PRJNA357586 | ENA

Human papillomavirus isolate:HPV_MGH-TT01

Human papillomavirus isolate:HPV_MGH-TT01 Genome sequencing and assembly

PRJNA1348789 | ENA

Human Papillomavirus

Human Papillomavirus Raw sequence reads

PRJNA278583 | ENA

Human papillomavirus