Ia-ms - OmicsDI

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Unknown (1080)
Proteomics (120)
Transcriptomics (79)
Genomics (17)
Metabolomics (13)
Genomic (4)
Other (1)
Multiomics (1)

Organisms

Acidithiobacillus ferrooxidans ATCC 53993 (106)
Aerococcus urinae NBRC 15544 = CCUG 36881 (106)
Allexis (106)
Arabidopsis thaliana (106)
Candida albicans (106)
Cyanophora paradoxa (106)
Ensifer adhaerens (106)
Enterococcus faecalis (106)
Globicatella sanguinis (106)
Histomonas meleagridis (106)
Leishmania major strain Friedlin (106)
Listeria monocytogenes (106)
Lotus japonicus (106)
Medicago truncatula (106)
Mus musculus (33)
Homo sapiens (30)
Rattus norvegicus (6)
Arabidopsis thaliana (5)
Saccharomyces cerevisiae (3)
Bacillus subtilis subsp. subtilis str. 168 (2)
Apis mellifera (2)
Oryza sativa (2)
Gallus gallus (2)
Sus scrofa (2)
Cereibacter sphaeroides (1)
Gambusia holbrooki (1)
Myxococcus xanthus (1)
Mus musculus domesticus (1)
Aspergillus fumigatus (1)
Bombyx mori (1)

Organisms

Mus musculus (2)
Aspergillus fumigatus (1)
Streptococcus agalactiae (1)
Arabidopsis thaliana (1)

Repository

pride (106)
biostudies-arrayexpress (84)
MetaboLights (13)
MassIVE (9)
ENA (7)
dbGaP (4)
jPOST (4)
EGA (3)
geo (3)
GPMDB (1)

Tissue

Cell culture (26)
Epithelial cell (13)
Plant cell (7)
Permanent cell line cell (6)
Kidney (5)
Liver (4)
Blood plasma (3)
Brain (3)
Leaf (3)
Whole body (3)
Breast (2)
Cell suspension culture (2)
Early embryonic cell (2)
Egg (2)
HeLa cell (2)
Melanocyte (2)
Venom (2)
Amnion (1)
Amniotic fluid (1)
Ascites (1)
B cell (1)
Blood platelet (1)
Blood serum (1)
Bone marrow (1)
Breast cancer cell line (1)
Bronchial epithelial cell (1)
Bronchoalveolar lavage (1)
Cell in vitro (1)
Egg cell (1)
HEK-293T cell (1)

Disease

Disease free (9)
Breast cancer (4)
Cystic fibrosis (3)
Cervix carcinoma (2)
Colon cancer (2)
Malignant neoplasm of ovary (2)
Prostate adenocarcinoma (2)
Phyllodes tumor (1)
Post-stasis (1)
Infiltrating ductal carcinoma (1)
Infected (1)
IBDV infected (1)
Normal (1)
Not Available (1)
Acute leukemia (1)
Adenocarcinoma (1)
Brain cancer (1)
Breast secretory carcinoma (1)
Carcinoma (1)
Cardiovascular system disease (1)
Cell type cancer (1)
Cutaneous malignant melanoma 1 (1)
Glioblastoma (1)
Idiopathic pulmonary fibrosis (1)
Kidney cancer (1)
Liver cirrhosis (1)
Lung cancer (1)
Lymphoma (1)
Melanoma (1)
Psoriatic arthritis (1)

Technology Type

Mass Spectrometry (106)
Shotgun proteomics (55)
Bottom-up proteomics (24)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-independent acquisition (8)
Data-dependent acquisition (7)
Top-down proteomics (5)
SRM/MRM (4)
SWATH MS (4)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)
HDMSE (1)

Instrument Platform

NextSeq 500 (8)
SYNAPT HDMS (Waters) (3)
418 [Affymetrix] (2)
GenePix 4000B [Axon Instruments] (2)
NextSeq 2000 (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
AB SCIEX Triple TOF 5600 (2)
TripleTOF 5600 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
10X Genomics Chromium (1)
Axon GenePix4000B (1)
Illumina HiScanSQ (1)
N/A (1)
DNBSEQ-T7 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Instrument (1)
AmaZon ETD (1)
LTQ (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Xevo TQ MS (1)
ACQUITY TQD (Waters) (1)
Q-TOF Premier (Waters) (1)
GCMS-QP2010 Plus (Shimadzu) (1)
Direct infusion MS - negative (1)

Publication Date

2024 (23)
2021 (23)
2026 (19)
2022 (17)
2013 (16)
2018 (14)
2016 (14)
2023 (13)
2025 (10)
2014 (10)
2012 (9)
2020 (8)
2019 (8)
2015 (7)
2011 (5)
2010 (5)
2006 (5)
2017 (3)
2009 (3)
2008 (3)
2004 (3)
2005 (1)

CHEBI ID

CHEBI:15428 (4)
CHEBI:28044 (4)
CHEBI:27693 (3)
CHEBI:26271 (3)
CHEBI:25094 (3)
CHEBI:22653 (3)
CHEBI:27570 (3)
CHEBI:18186 (3)
CHEBI:37684 (3)
CHEBI:26986 (3)
CHEBI:17234 (3)
CHEBI:28300 (3)
CHEBI:18257 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:16958 (3)
CHEBI:17268 (3)
CHEBI:6650 (3)
CHEBI:27266 (3)
CHEBI:17750 (3)
CHEBI:16449 (3)
CHEBI:18012 (3)
CHEBI:27897 (3)
CHEBI:75278 (2)
CHEBI:28824 (2)
CHEBI:28623 (2)
CHEBI:85158 (2)
CHEBI:18222 (2)
CHEBI:24809 (2)
CHEBI:22470 (2)

Metabolite Name

Stigmasterol (2)
Campesterol (2)
Homoserine (2)
Xylose (2)
Ribitol (2)
Alpha-tocopherol (2)
Arabinose (2)
Maltose (2)
Ribose (2)
Beta-sitosterol (2)
Glycine (2)
Uridine (2)
Serine (2)
Proline (2)
Lysine (2)
Asparagine (2)
Histidine (2)
Phenylalanine (2)
Tyrosine (2)
Fructose (2)
Mannose (2)
Threonine (2)
Glucose (2)
Glutamine (2)
Alanine (2)
Valine (2)
Isoleucine (2)
Leucine (2)
12,13-DiHOME (2)
Glycerophosphoglycerol (2)

First Public Date

2024 (2)
2025 (1)
2023 (1)
2021 (1)
2017 (1)
2014 (1)

Classification

fungi (1)
bacteria (1)

Modification

15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (48)
RNA-seq of coding RNA (12)
ChIP-seq (6)
Methylation profiling by array (3)
RNA-seq of non coding RNA (3)
Other (2)
RNA-seq of total RNA (2)
GRO-seq (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (146)
2022 (140)
2025 (119)
2023 (114)
2024 (109)
2020 (96)
2019 (78)
2018 (66)
2016 (47)
2017 (45)
2014 (34)
2013 (34)
2012 (29)
2015 (28)
2011 (19)
2010 (17)
2026 (15)
2009 (6)
2008 (5)
2006 (5)
2005 (3)
2004 (3)
2007 (3)
2002 (2)
2000 (1)

Lab affiliation

Department of Biological Sciences, University of Alberta (5)
Biological Chemistry Department David Geffen School of Medicine UCLA (4)
Chemistry Department, Boston College, USA (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (3)
Vividion Therapeutics (3)
Crick-GSK LinkLabs, UK (2)
Department of Chemistry, Scripps Research (2)
Head of Laboratory of Neuro-Oncology Clinical & Cancer Proteomics Erasmus MC the Netherlands (2)
Institute for Transformative Molecular Medicine, Case Western Reserve University School of Medicine (2)
Wellcome Centre for Cell-matrix biology, University of Manchester, UK. (2)
1Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising GERMANY (1)
Biological Chemistry Department David Greffen School of Medicine UCLA (1)
Boston College, Department of Biology, MA, USA (1)
Boston College, Department of Chemistry (1)
CNIO (1)
CNRS, UMR Ecologie des forêts de Guyane – EcoFoG (AgroParisTech, CIRAD, INRAE, Université de Guyane, Université des Antilles), Campus Agronomique, BP 316, 97379 Kourou Cedex, France (1)
Carnegie Mass Spectrometry Facility at Stanford (1)
Center for Cancer Research, Massachusetts General Hospital, Boston MA, USA;Department of Chemistry and Chemical Biology, Harvard University, Cambridge MA, USA. (1)
Center of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK (1)
Centre for Proteome Research, University of Liverpool (1)
Centre of New Technologies, University of Warsaw, S. Banacha 2c, 02-097 Warsaw, Poland (1)
Department oF Biological Sciences, University of Alberta (1)
Department of Animal and Poultry Sciences, Virginia Tech., Blacksburg, VA, USA (1)
Department of Biological Sciences University of Alberta (1)
Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel (1)
Department of Chemistry Technical University of Munich Germany (1)
Department of Chemistry, Boston College, Chestnut Hill, Massachusetts, USA (1)
Department of Chemistry, Boston College, USA (1)

Tags

xref:PubMed:39633045 (2)
pathogen (2)
xref:PubMed:19876644 (1)
pathogen:fungus (1)
pathogen:bacterium (1)

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MS-based label-free quantification of the ratio of AIFM1/AK2 peptide intensities from CTRL or IA-treated FLAG pull-downs

This project aims to utilize mass spectrometry (MS) for label-free quantification of the peptide intensity ratio of AIFM1 (Apoptosis-Inducing Factor Mitochondrion-Associated 1) and AK2 (Adenylate Kinase 2) in control (CTRL) and iodoacetamide (IA)-treated FLAG pull-down samples. The approach focuses ...

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD052852 | Pride

Dia Ap-ms

Streptococcus agalactiae

Streptococcus agalactiae Genome sequencing

PRJNA1287060 | ENA

Dynamic steps in receptor tyrosine kinase mediated activation of class IA phosphoinositide 3-kinases (PI3K) captured by H/D exchange (HDX-MS).

Not available

S-EPMC3613897 | biostudies-literature

Plasma biomarkers TAP, CPA1, and CPA2 for the detection of pancreatic injury in rat: the development of a novel multiplex IA-LC-MS/MS assay and biomarker performance evaluation.

Not available

S-EPMC9968696 | biostudies-literature

Demonstration of increased biologically active CXCL12Î± plasma concentrations after ACKR3 antagonist treatment in humans

CXCL12 is a chemokine that binds to its cognate receptors CXCR4 and ACKR3 (CXCR7). An increase in CXCL12 concentrations has been used as a pharmacodynamic biomarker to assess ACKR3 antagonism in healthy adults. Furthermore, increased CXCL12 concentrations have been observed in various human patholog...

ORGANISM(S): Homo sapiens (Human)

2024-01-27 | PXD038814 | Pride

Plasma Ia-ms Biomarker

UPLC-QTOF-MS metabolomics analysis revealed the contributions of metabolites to the pathogenesis of Rhizoctonia solani strain AG-1-IA.

Not available

S-EPMC5800620 | biostudies-literature

Head-to-Head Comparison of 8 Plasma Amyloid-β 42/40 Assays in Alzheimer Disease.

Not available

S-EPMC8453354 | biostudies-literature

The effect of specific binding proteins on immunoassay measurements of total and free thyroid hormones and cortisol.

Not available

S-EPMC7844449 | biostudies-literature