Idp - OmicsDI

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Transcriptomics (701)
Unknown (658)
Metabolomics (112)
Genomics (107)
Proteomics (31)
Models (18)
Other (3)

Organisms

Homo sapiens (456)
Mus musculus (168)
Streptococcus pneumoniae D39 (16)
Saccharomyces cerevisiae (16)
Arabidopsis thaliana (14)
Rattus norvegicus (10)
Drosophila melanogaster (10)
Danio rerio (6)
Bos taurus (5)
Macaca mulatta (3)
Zea mays (3)
Schizosaccharomyces pombe (3)
Oryza sativa (3)
Gallus gallus (3)
Sus scrofa (3)
Anopheles gambiae (2)
Glycine max (2)
Ovis aries (2)
Plasmodium falciparum (2)
Canis lupus familiaris (2)
Escherichia coli (2)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
Nitrosomonas europaea (1)
Staphylococcus epidermidis ATCC 12228 (1)
Agrobacterium tumefaciens (1)
activated sludge metagenome (1)
Streptococcus dysgalactiae subsp. equisimilis (1)
Saccharum sp. (1)

Organisms

Yarrowia lipolytica (9)
Caenorhabditis elegans (5)
Mus musculus (4)
Zea mays (2)
Homo sapiens (2)
Lactuca sativa (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (719)
MetaboLights (62)
EGA (56)
MetabolomicsWorkbench (50)
ENA (25)
BioModels (18)
MassIVE (16)
pride (9)
geo (6)
jPOST (6)
EVA (3)
iProX (2)

Tissue

Blood (18)
Cultured cells (10)
Cell culture (5)
Cecum (4)
Muscle (3)
Liver (3)
Parasite (2)
Adipose tissue (2)
Heart (2)
Brain (2)
Macrophages (2)
Bacterial cells (2)
Permanent cell line cell (2)
Plasmodium cells (1)
Fibroblast cells (1)
Bone marrow (1)
Yeast cells (1)
Lung (1)
T-cells (1)
Seed (1)
Whole body (1)
Kidney (1)

Disease

Malaria (15)
Cancer (7)
COVID-19 (4)
Breast cancer (2)
Autism (2)
Influenza (2)
Down syndrome (2)
HPV positive (1)
High grade glioblastoma (1)
Primary effusion lymphoma (PEL) (1)
MPN (1)
Oligodendroglioma (1)
Schizophrenia (1)
Leukemia (1)
Muscular dystrophy (1)
Angina (1)
Alzheimers disease (1)
Heart disease (1)
Fatty liver disease (1)
Disease free (1)

Technology Type

Mass Spectrometry (59)
ESI (50)
Mass spectrometry (36)
Mass spectrometry assay (24)
Shotgun proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Bottom-up proteomics (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
OXFORD_NANOPORE, MinION (1)
Illumina 450K (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Illumina HumanExome-12v1_A (1)
Illumina HiSeq 1000 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)

Instrument Platform

NextSeq 500 (9)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 2000 (4)
Illumina MiSeq (3)
Illumina iScan (2)
Synapt G2 HDMS (2)
TimsTOF Pro (2)
Q Exactive Plus (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion Lumos (2)
FACSAria III (BD Sciences) (1)
BD FACSAria™ III (1)
Illumina Hybridisation Oven (1)
Illumina Hybridization Oven (1)
Thermal cycler, Eppendorf ThermoMixer C (1)
Promega Maxwell RSC instrument (1)
Leica microtome, 1 mm biopsy punch (1)
HPC (1)
Illumins Hybridisation Oven (1)
10x Genomics Chromium (1)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
Illumina iScan System (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
- (1)
NanoACQUITY UPLC (1)
LTQ (1)
TripleTOF 5600 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)

Publication Date

2015 (128)
2013 (115)
2014 (92)
2010 (92)
2012 (85)
2011 (68)
2016 (39)
2026 (29)
2008 (29)
2025 (23)
2022 (22)
2024 (21)
2009 (20)
2020 (12)
2021 (12)
2019 (12)
2007 (12)
2023 (10)
2017 (7)
2018 (6)
2005 (3)
2004 (1)

UNIPROT ID/AC

Q01813 (2)
P14618 (2)
P17858 (2)
P21439 (2)
P05062 (2)
P09972 (2)
P04075 (2)
P07738 (2)
P00338 (2)
P07195 (2)
P04406 (2)
P43490 (2)
P30613 (2)
P06744 (2)
P06733 (2)
P09104 (2)
P13929 (2)
P08237 (2)
O14556 (2)
P00558 (2)
P07205 (2)
P18669 (2)
P60174 (2)
A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)

CHEBI ID

CHEBI:15428 (33)
CHEBI:16335 (33)
CHEBI:18012 (32)
CHEBI:15741 (29)
CHEBI:17256 (28)
CHEBI:16828 (27)
CHEBI:15971 (26)
CHEBI:17172 (26)
CHEBI:15698 (25)
CHEBI:17895 (25)
CHEBI:17203 (24)
CHEBI:17154 (23)
CHEBI:57692 (15)
CHEBI:18191 (15)
CHEBI:29101 (15)
CHEBI:16240 (15)
CHEBI:16958 (15)
CHEBI:17191 (15)
CHEBI:16349 (15)
CHEBI:15377 (15)
CHEBI:17115 (15)
CHEBI:15343 (15)
CHEBI:16526 (15)
CHEBI:37565 (14)
CHEBI:597326 (14)
CHEBI:7125 (14)
CHEBI:17158 (14)
CHEBI:29033 (14)
CHEBI:15811 (14)
CHEBI:37737 (14)

Metabolite Name

IDP (52)
Taurine (36)
Uridine (33)
Inosine (33)
Uric acid (30)
DUMP (28)
Xanthosine (28)
Guanosine (28)
Hypoxanthine (28)
Cholic acid (27)
Xanthine (27)
Creatinine (27)
Uracil (26)
Thymidine (26)
Creatine (26)
CDP (25)
Citric acid (25)
FAD (24)
L-Histidine (24)
Adenosine (24)
IMP (23)
Glutathione (23)
4-Pyridoxic acid (23)
DCMP (23)
ADP (23)
Xanthurenic acid (23)
D-Erythrose 4-phosphate (23)
Suberic acid (23)
Azelaic acid (23)
Adenine (23)

First Public Date

2018 (10)
2025 (4)
2024 (2)
2023 (2)
2022 (2)
2014 (2)
2026 (1)
2021 (1)
2017 (1)

Modelling Approach

Constraint-based model (14)
Other (2)
Metabolic network (2)

Lab affiliation

1. Department of Structural Biology, Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland 2. Department of Physical Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland (1)
MPI für Molekulare Pflanzenphysiologie, Potsdam, Head of Zentrale Infrastrukturgruppe Genomics und Transkript Profiling (1)
1. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada 2. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 3. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada 4. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada (1)
Department of Pharmaceutical Chemistry & Bioanalytics AG Sinz Institute of Pharmacy, Center for Structural Mass Spectrometry Martin Luther University Halle-Wittenberg Germany (1)
Director of Bioinformatics and Proteomics, Meharry Medical College; Adjunct Associate Professor, Department of Biomedical Informatics, Vanderbilt University Medical Center (1)
Department of Physical and Chemical Sciences, University of Lâ€™Aquila, Via Vetoio, Coppito 1, 6701067100 Lâ€™Aquila, Italy (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)
School of Medicine, Departement of Biochemistry and Molecular Medicine, West Virginia University, Morgantown U.S. (1)
Weizmann Institute of Science (1)