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Publication Date

2013 (207)
2015 (176)
2014 (145)
2012 (141)
2010 (125)
2016 (123)
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2011 (70)
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2018 (49)
2019 (44)
2008 (35)
2009 (29)
2017 (23)
2006 (22)
2007 (10)
2005 (9)
2004 (1)

CHEBI ID

CHEBI:7417 (1)
CHEBI:17256 (1)

Metabolite Name

N6-methyl-2’-deoxyadenosine (1)
Deoxyadenosine (1)

First Public Date

2025 (6)
2023 (6)
2026 (4)
2021 (4)
2020 (4)
2024 (2)
2017 (2)
2014 (2)
2022 (1)
2019 (1)
2018 (1)
2013 (1)

Modification

4-dinitrophenyl modified residue (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

ChIP-seq (467)
ChIP-chip by tiling array (204)
RNA-seq of coding RNA (137)
Transcription profiling by array (106)
ChIP-chip by array (99)
Other (80)
ATAC-seq (29)
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RNA-seq of coding RNA from single cells (20)
Comparative genomic hybridization by array (16)
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CUT&RUN (15)
Cell line - High-throughput sequencing (14)
RIP-seq (14)
DNA-seq (13)
CLIP-seq (12)
Hi-C (12)
Methylation profiling by high throughput sequencing (12)
Animal - High-throughput sequencing (11)
Single nucleus RNA sequencing (9)
Ribo-seq (7)
ScATAC-seq (7)
Transcription profiling by tiling array (6)
MNase-seq (5)
Animal - Single-cell sequencing (5)
Methylation profiling by array (5)
High-throughput sequencing (4)
4C (4)
RNA-seq of total RNA (4)
GRO-seq (3)

Release Date

2013 (207)
2015 (162)
2014 (144)
2012 (141)
2010 (126)
2016 (118)
2011 (70)
2021 (51)
2023 (42)
2026 (40)
2025 (37)
2008 (35)
2018 (30)
2009 (29)
2020 (28)
2022 (25)
2019 (23)
2006 (22)
2024 (21)
2017 (14)
2007 (10)
2005 (8)
2004 (1)

Lab affiliation

University of Oxford (15)
University of Bristol (10)
School of Life Sciences, University of Warwick (9)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (7)
Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (6)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (5)
Cellzome (5)
Biochemistry Center Heidelberg, University of Heidelberg, Germany (4)
Faculty of Biology, Technion - Israel Institute of Technology (4)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (4)
EDyP (4)
University of Oxford University of Dundee (4)
Crick-GSK LinkLabs, UK (3)
Dept. Oncology-Pathology, Scilifelab, Karolinska Institutet, Sweden (3)
Department of Biochemistry and Molecular Biology and the Biomedicine Discovery Institute; Monash University; Clayton 3800; Victoria; Australia (3)
GSK (3)
Cancer Science Institute of Singapore, National University of Singapore (3)
Signalling ISP, Babraham Institute, Cambridge, UK (3)
Department of Chemistry, University of Washington (3)
Harvard Medical School Cell Biology Department (3)
Department of Pharmacy, University of Salerno, 84084 Fisciano, Italy (2)
Developmental Biology, Institute of Biodynamics and Biocomplexity, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands (2)
The Francis Crick Institute London, UK (2)
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), 1030 Vienna, Austria. (2)
Institute of Parasitology Biology Center, Czech Academy of Sciences Branišovská 31 370 05 České Budějovice CZECH REPUBLIC (2)
Biology Department, University of Massachusetts Boston, USA (2)
Professor Anthony W Purcell Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (2)
National Center for Protein Science Beijing (2)
Monash University (2)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (2)

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Direct RT-PCR amplification of SARS-CoV-2 from clinical samples using a concentrated viral lysis-amplification buffer prepared with IGEPAL-630.

Not available

S-EPMC8270935 | biostudies-literature

Improved protocol for single-nucleus RNA-sequencing of frozen human bladder tumor biopsies.

Not available

S-EPMC10012951 | biostudies-literature

SINV-nsP3 mScarelt-tagged immunoprecipitation

1x107 cells HEK293 FLP-IN T-REX cells were infected with SINVnsP3-mScarlet (bait) or SINVwt (negative control) at 1 MOI. After 18 hours, cells were scrapped and spin down at 300 g 4°C for 10 mins. After the centrifugation, supernatants were discarded and cell pellet washed once with 1X PBS, followed...

ORGANISM(S): Homo sapiens (Human)

2024-12-19 | PXD054117 | Pride

Sinv-nsp3

The chromosomal architecture of acute myelocytic leukemia HL-60 cells upon all-trans retinoid acid treatment

2×10^7 HL60 cells were treated with 10 uM ATRA for 2 and 5 days, and conducted Hi-C to study the chromosomal architecture. Cells were fixed by 1% formaldehyde (v/v) for 15 min at room temperature (RT) with slowly rotation. Cells were lysed by 550 μl lysis buffer (500 μl 10 mM Tris-HCl pH 8.0, 10 mM ...

ORGANISM(S): Homo sapiens

2020-05-07 | E-MTAB-8547 | biostudies-arrayexpress

STXBP5 prevents reannealing of autophagic cis-SNARE disassembled by NSF/αSNAP

We generated a HEK293 cell line expressing ZZ-TEV-FLAG-bait protein by Lipofectamine 3000 transfection. The expression level of bait protein is controlled to endogenous level by addition of 2 ng/mL doxycycline. Note the combined treatment of Torin1 and CQ was applied for STX17. The tandem affinity p...

ORGANISM(S): Homo sapiens (Human)

2023-09-18 | PXD043048 | Pride

Stxbp5 Alphasnap Autophagy Disassemble Snare Nsf

Modulation of the Excited-State Proton Transfer Rate of d-luciferin in Mixed Reverse Micellar Systems.

Not available

S-EPMC6641905 | biostudies-literature

A simple elution strategy for biotinylated proteins bound to streptavidin conjugated beads using excess biotin and heat.

Not available

S-EPMC5693302 | biostudies-literature

Heterodimerization of BAK and MCL-1 activated by detergent micelles.

Not available

S-EPMC3003418 | biostudies-literature