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ProteomicsPhytophthora detection in planta
Phytophthora is arguably one of the most damaging genera of plant pathogens and is recognized as a threat to a broad spectrum of plant species. This pathogen is well suited to transmission via the international plant trade, and globalization has been promoting its spread since the 19th century. Earl...
ORGANISM(S): Solanum tuberosum (Potato) Hordeum vulgare (Barley) 
2020-12-15 | PXD022569 | Pride
P. palmivora Proteomics P. infestans Hordeum vulgare Solanum tuberosum Phytophthora 
GenomicsIn planta bacterial RNA-Seq of Xanthomonas L148
In planta bacterial RNA-Seq of Xanthomonas L148
PRJNA940735 | ENA
GenomicsTranscriptome analyses of Colletotrichum orbiculare during appressorium formation in planta
Transcriptome analyses of Colletotrichum orbiculare during appressorium formation in planta
PRJNA430474 | ENA
ProteomicsDevelopment of in planta chemical cross-linking-based quantitative interactomics in Arabidopsis
An in planta chemical cross-linking-based quantitative interactomics (IPQCX-MS) workflow has been developed to investigate in vivo protein-protein interactions and alteration in protein structures in a model organism, Arabidopsis thaliana. A chemical cross-linker, azide-tag-modified disuccinimidyl p...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-08-14 | PXD008161 | Pride
Arabidopsis thaliana Ecl2 In planta quantitative interactomics Ipqcx-ms In vivo cross-linking 4c proteomic workflow 
ProteomicsIn planta transcriptome and proteome profiles of Spongospora subterranea illuminates regulatory principles underlying host-pathogen interaction
Spongospora subterranea is an obligate biotrophic pathogen, causing a tremendous economic loss in the potato industry. Currently, there are no effective chemical or biological strategies for the control of S. subterranea. Understanding the gene regulation of pathogens in their host is dependent on m...
ORGANISM(S): Spongospora subterranea 
2022-02-17 | PXD027266 | Pride
Spongospora subterranea  potato  in planta analysis  transcriptomics  proteomics 
ProteomicsIn planta chemical crosslinking and mass spectrometry analysis of protein structure and interaction in Arabidopsis
Mass spectrometry analysis in combination with the site-specific chemical cross-linking has emerged as a powerful method in study of three-dimensional structure of protein complex and in mapping of protein-protein interactions (PPIs). Even though in vitro cross-linking experiments have been widely a...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-06-28 | PXD003658 | Pride
Arabidopsis Mass spectrometry Disuccinimidyl suberate In planta chemical cross-linking Interactomics Exhaustive cross-linked peptides identification tool 
GenomicsIn planta dynamics, transport-biases and endogenous functions of mobile siRNAs in Arabidopsis
In planta dynamics, transport-biases and endogenous functions of mobile siRNAs in Arabidopsis
PRJNA449337 | ENA
ProteomicsPseudomonas syringae effector HopZ3 suppresses PTO immune pathway in tomato by acetylation
The plant pathogen Pseudomonas syringae secretes multiple effectors to suppress plant defenses. Some effectors are recognized by plants while others can function to suppress the resulting immune responses. HopZ3 of Psy B728a is an aminotransferase targeting multiple components of both plant immune ...
ORGANISM(S): Pseudomonas syringae pv. syringae 
2021-10-18 | PXD022953 | Pride
Lc-msms Ptms Q-exactive Pto Hopz3 Plant effectors Acetylation Phosphorylation 
TranscriptomicsTranscriptome analyses of Colletotrichum orbiculare during appressorium formation in planta
To elucidate the involvement of MOR (morphogenesis-related NDR kinase network) pathway in regulation of genes that are specifically expressed during appressorium development in planta, transcriptome analyses at the stage of appressorium formation (4 hours post inoculation) and in planta were perform...
ORGANISM(S): Colletotrichum orbiculare 
2020-01-31 | GSE109337 | GEO
TranscriptomicsRole assessment of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host by comparing the in planta and in vitro RNA-seq transcriptomes of wildtype CFBP 1430 and its T6SS double mutant (T6-d1d3)
To assess the contribution of type VI secretion systems to virulence and potential transcriptomic changes of E. amylovora CFBP 1430, a double mutant in two structural genes was generated (T6-d1d3). An in vitro RNA-seq transcriptome comparison of the wildtype to the T6-d1d3 mutant was made by growing...
ORGANISM(S): Erwinia amylovora 
2017-08-07 | E-MTAB-5444 | biostudies-arrayexpress
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