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TranscriptomicsTranscription profiling of zebrafish germ layer morphogenesis
In gastrulation, distinct progenitor cell populations are induced and sorted into the three germ layers ectoderm, mesoderm and endoderm. In order to identify genes involved in germ layer specification and morphogenesis, we identified genes differentially expressed between ectodermal and mesendoderma...
ORGANISM(S): Danio rerio 
2005-12-01 | E-MEXP-171 | biostudies-arrayexpress
TranscriptomicsTranscriptome profile of in vitro produced blastocysts derived from in vitro matured oocytes exposed to exogenous interleukin-6
This study explores the biological role of interleukin-6 (IL-6) as a supplement during in vitro maturation (IVM) of porcine oocytes, aiming to enhance embryonic development and reduce apoptosis following in vitro fertilization (IVF). The objective was to determine whether IL-6 supplementation alters...
ORGANISM(S): Sus scrofa 
2025-06-30 | E-MTAB-15241 | biostudies-arrayexpress
GenomicsEngineering signaling centers to trigger human trunk morphogenesis in vitro
Engineering signaling centers to trigger human trunk morphogenesis in vitro
PRJNA1312365 | ENA
TranscriptomicsExpression data from early diphyodont morphogenesis in minature pig
The miniature pig is diphyodont, making it a valuable alternative model for understanding human tooth development and replacement. However, little is known about gene expression and function during swine odontogenesis. The goal of this study is to undertake the survey of differential gene expressio...
ORGANISM(S): Sus scrofa 
2014-12-23 | E-GEOD-53182 | biostudies-arrayexpress
TranscriptomicsGenome-Wide Dynamics of Replication Timing Revealed by In Vitro Models of Mouse Embryogenesis
This SuperSeries is composed of the following subset Series: GSE17980: Genome-Wide Dynamics of Replication Timing Revealed by In Vitro Models of Mouse Embryogenesis (Expression) GSE17983: Genome-Wide Dynamics of Replication Timing Revealed by In Vitro Models of Mouse Embryogenesis (WG_CGH; Replicati...
ORGANISM(S): Mus musculus 
2010-05-19 | E-GEOD-18019 | biostudies-arrayexpress
ProteomicsSILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers
Abstract: Proteomics has been successfully used for cell culture on dishes, but more complex cellular systems have proven to be challenging and so far poorly approached with proteomics. Because of the complexity of the angiogenic program, we still do not have a complete understanding of the molecula...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-02 | MSV000079883 | MassIVE
TranscriptomicsExpression profiling of MCF10A cells in 2D and 3D culture
In these microarray experiments, we characterize the gene expression of mammary epithelial cells (MCF10A cells) grown in either a traditional monolayer cell culture setting (2D) or on Matrigel, which induces single MCF10A cells to form organized acinar structures (3D). Morphogenesis of mammary epith...
ORGANISM(S): Homo sapiens 
2011-06-01 | E-GEOD-26148 | biostudies-arrayexpress
ProteomicsAcquisition of embryogenic competence during protoplast development of Fagopyrum
Reprogramming in protoplast cultures is a key step for acquiring embryogenic competence by dedifferentiated cells, thus leading to plant regeneration. Therefore, to better understand factors trigging the processes, this work focuses on analysing proteomes, cell wall composition and changes in the ex...
ORGANISM(S): Fagopyrum Esculentum (ncbitaxon:3617) Fagopyrum Tataricum (ncbitaxon:62330) 
MSV000095861 | MassIVE
TranscriptomicsExpression profiling of 3D 2D MDCKII epithelial morphogenesis
Formation of epithelial tissues requires the generation of apical-basal polarity and the co-ordination of this polarity between neighboring cells to form a central lumen. MDCK cell line has proven to be a powerful model to study mammalian polarized epithelia in vitro. MDCK cells plated in extracellu...
ORGANISM(S): Canis lupus familiaris 
2011-09-30 | E-GEOD-32495 | biostudies-arrayexpress
ProteomicsAnimal-free three-dimensional in vitro angiogenesis tool
All metabolically active tissues have a dense vascular network to supply oxygen and nutrients. Angiogenesis, the formation of new blood vessels from existing ones, can be activated by the lack of oxygen in cells, disease, trauma, or tumor growth. Due to its essential role in cell survival, angiogene...
ORGANISM(S): Homo sapiens (Human) 
2026-08-24 | PXD077881 | Pride
Human Capillary-like formation In vitro 3d cell model Animal-free Angiogenesis Nanofibrillated cellulose hydrogel Coculture 
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