Injury/repair - OmicsDI

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Unknown (7486)
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Mus musculus (950)
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unidentified (2)
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mouse gut metagenome (2)
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Tissue

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Disease

Wounds and Injuries (9)
Cardiovascular system disease (2)
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Non-union skeletal fracture (1)
Injured (1)
DNA damage (1)
Melanoma (1)
Cataract (1)
Acute kidney failure (1)
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Chronic obstructive pulmonary disease (1)
Influenza (1)
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Liver inflammation (1)
Myocardial ischemia (1)
Ovarian dysfunction (1)
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Sciatic nerve (1)

Technology Type

Mass Spectrometry (87)
Shotgun proteomics (40)
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DiaPASEF (1)
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SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
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Publication Date

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2003 (1)

CHEBI ID

CHEBI:15422 (5)
CHEBI:16027 (5)
CHEBI:15846 (4)
CHEBI:16695 (4)
CHEBI:32816 (4)
CHEBI:78320 (4)
CHEBI:17345 (4)
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CHEBI:17677 (3)
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CHEBI:15713 (3)
CHEBI:17287 (3)
CHEBI:16856 (3)
CHEBI:17568 (3)
CHEBI:16264 (3)
CHEBI:17659 (3)
CHEBI:44897 (3)

Metabolite Name

Adenine (7)
Adenosine (6)
Creatine (6)
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AMP (5)
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Myristic acid (4)
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L-Leucine (4)
Azulene (3)
Fendiline (3)
Methyl stearate (3)
Amitrole (3)
4-Hydroxycyclophosphamide (3)
L-Cysteinesulfinic acid (3)

First Public Date

2026 (278)
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2014 (75)
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2015 (22)
2016 (11)
2013 (1)

Classification

bacteria (1)

Study status

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Study type

Transcription profiling by array (286)
RNA-seq of coding RNA (43)
ChIP-seq (11)
Unknown experiment type (7)
Other (7)
RNA-seq of coding RNA from single cells (7)
ChIP-chip by tiling array (4)
Animal - High-throughput sequencing (3)
DNA-seq (3)
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Hi-C (2)
MicroRNA profiling by array (2)
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RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Baseline (1)
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CUT&RUN (1)
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Release Date

2025 (953)
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2009 (61)
2007 (33)
2006 (23)
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2005 (9)
2001 (6)
2002 (5)
2000 (5)
2003 (3)
1998 (2)
1999 (1)

Lab affiliation

Centre of Molecular Inflammation Research (CEMIR, www.ntnu.edu/cemir) Dept. of Clinical and Molecular Medicine Norwegian University of Science and Technology (NTNU) Trondheim (2)
Proteomics facility, Central Science Laboratory, University of Tasmania (2)
Aalborg University Laboratory for Medical Massspectrometry (1)
Advanced Clinical Biosystems Research Institute, Smidt Heart Institute, Cedars-Sinai Medical Center 127 S San Vicente Blvd, Los Angeles, CA 90048, USA (1)
Alfred E. Mann Department of Biomedical Engineering, University of Southern California, Los Angeles, CA, 90089, USA Department of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine of USC, Los Angeles, CA, 90033, USA (1)
Assistant Professor Chemistry and Biochemistry University of Texas at Arlington Box 19065 700 Planetarium Place, Room 130 Arlington, TX 76019 United States (1)
Biomedical Center Munich (BMC), Department of Cell Biology and Anatomy, Medical Faculty, LMU, Munich, Germany; Institute of Stem Cell Research, Helmholtz Zentrum Munich, Munich, Germany (1)
Centre for Proteomic Research, University of Southampton (1)
Comparative Biomedical Sciences Royal Veterinary College Royal College Street London NW1 0TU (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Croatian Institute for Brain Research and Department of Histology and Embryology, University of Zagreb School of Medicine, 10000 Zagreb, Croatia (1)
DZNE - German Center for Neurodegenerative Diseases Munich, Neuroproteomics, Feodor-Lynen Str. 17, D-81377 Munich, Germany (1)
Departamento de Bioquímica, Biología Molecular y Genética de la Universidad de Extremadura. España (1)
Departement for Biomedical Research University of Bern Switzerland (1)
Department of Anatomy and Developmental BiologyMonash University, Clayton, Victoria, Australia; Development and Stem Cells Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia. Alexander N Combes alex.combes@monash.edu. David J Nikolic-Paterson david.nikolic-paterson@monash.edu. (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO, USA (1)
Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington 98109, USA (1)
Department of Biology University of Fribourg Chemin du Musée 10 Room 1.302 CH-1700 Fribourg Switzerland (1)
Department of Life Sciences, Korea University, Seoul 02841, Korea (1)
Department of Life Sciences, Korea University, Seoul 02841, Republic of Korea (1)
Department of Molecular Cell Biology, Weizmann Institute of Science (1)
Department of Molecular Medicine and Surgery Center for Molecular Medicine, Karolinska Institutet (1)
Department of Morphology, Cell and Molecular Biology Laboratory (LBCM),Biological Sciences Institute (ICB), Federal University of Minas Gerais (UFMG), Brazil (1)
Department of Orthopedic Surgery, Department of Biomedical Engineering, Columbia University; New York, New York, USA (1)
Department of Pediatrics, UMCG/RUG, Groningen, The Netherlands (1)
Department of Pharmaceutical Sciences, Faculty of Life Sciences, University of Vienna (1)
Department of Pharmacology and Toxicology, National Institute of Pharmaceutical Education and Research, Ahmedabad (1)
Department of Pharmacy at the Second Affiliated Hospital, Harbin Medical University, Harbin, China. (1)
Department of Pharmacy, Baotou Medical College, Baotou, Inner Mongolia, China (1)
Department of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden The Structural Genomics Consortium (SGC), Karolinska Institutet, Stockholm, Sweden (1)

Location

Australia (1)
United States (1)

Keyword

Radiation-induced late intestinal injury, Rectal cancer, NCRT, TME, Phase separation (1)
Neglected Diseases (1)
Orphan Diseases (1)
Rare Disease Research (1)
Registries (1)
Batten Disease (1)
Mucolipidosis IV (1)
Undiagnosed (1)
Uncommon Disease (1)
Hypersomnia (1)
Marinesco-Sjogren Syndrome (1)
4p-/Wolf-Hirschhorn Syndrome (1)
Wiedermann-Steiner Syndrome (1)
Hemophagocytic Lymphohistiocytosis (HLH) (1)
Behcet’s Disease (1)
Jansen metaphyseal chondrodysplasia (1)
Chronic recurrent multifocal osteomyelitis (CRMO) (1)
Hereditary Sensory and Autonomic Neuropathy (1)
Nephropathic infantile cystinosis (1)
Ocular cystinosis (1)
Spinal Bulbar Muscular Atrophy (SBMA) (1)
Mucolipidosis (1)
Mitochondrial aminoacyl-tRNA synthetases (Mt-aaRS Disorders) (1)
Shine Syndrome (1)
Intestinal Bromhidrosis Syndrome (1)
Autosomal recessive extra oral halitosis (1)
CACNA1H mutation (1)
Dimethylglycine dehydrogenase deficiency (1)

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Transcription profiling of skeleton muscles recovering at different time points after eccentric contraction and freeze-induced injury to compare the molecular events accompanying the degeneration and repair phases of muscle injuries

Common acute injuries to skeletal muscle can lead to significant pain and disability. The current therapeutic approaches for treating muscle injuries are dependent on the clinical severity but not on the type of injury. The aim of this study was to compare the molecular events accompanying the deg...

ORGANISM(S): Mus musculus

2007-11-22 | E-GEOD-5413 | biostudies-arrayexpress

Defects in sarcolemma repair and skeletal muscle function after injury in a mouse model of Niemann-Pick type A/B disease

Background: Niemann-Pick disease type A (NPDA), a disease caused by mutations in acid sphingomyelinase (ASM), involves severe neurodegeneration and early death. Intracellular lipid accumulation and plasma membrane alterations are implicated in the pathology. ASM is also linked to the mechanism of pl...

ORGANISM(S): Mus musculus (Mouse)

2023-06-28 | PXD019356 | Pride

Electrical stimulation to repair spinal cord injury

PRJNA989738 | ENA

Hypoxic injury triggers maladaptive repair in human kidney organoids

PRJNA1167786 | ENA

scRNA sequencing of skeletal repair cells at 4 days post injury

PRJNA803190 | ENA

High-definition spatiotemporal atlas of cholestatic injury and repair.

PRJNA907303 | ENA

Time and compartment resolved proteome profiling of the extracellular niche in lung injury and repair

The extracellular niche is a key regulator of tissue morphogenesis and repair, however, its composition is currently not well characterized. Quantitative mass spectrometry resolved the dynamics of 8366 proteins from total tissue and bronchioalveolar lavage fluid in the consecutive phases of repair u...

ORGANISM(S): Mus musculus (Mouse)

2015-07-21 | PXD001765 | Pride

Regeneration Proteomics Matrisome Fibrosis Repair

Antimicrobial immunity impedes CNS vascular repair following brain injury

PRJNA722016 | ENA

Hypoxic injury triggers maladaptive repair in human kidney organoids [scRNA-seq]

PRJNA1013406 | ENA

Transcriptional profiling of mouse proximal tubular epithelial cells during injury and repair

PRJNA496049 | ENA

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