Intestines - OmicsDI

Show results for

Unknown (2322)
Transcriptomics (982)
Genomics (974)
Metabolomics (408)
Proteomics (202)
Clinical (16)
Other (13)
Models (2)
Methylation profiling (2)
Multiomics (1)

Organisms

Mus musculus (579)
Homo sapiens (285)
Drosophila melanogaster (35)
Rattus norvegicus (30)
Sus scrofa (22)
Gallus gallus (19)
Caenorhabditis elegans (18)
Danio rerio (16)
Bos taurus (10)
Escherichia coli (9)
Salmo salar (8)
Vibrio cholerae (8)
Bacteroides thetaiotaomicron (5)
Rousettus aegyptiacus (4)
Oncorhynchus mykiss (4)
Ascaris suum (4)
Epinephelus fuscoguttatus x Epinephelus lanceolatus (3)
Apostichopus japonicus (3)
Strongyloides ratti (3)
Listeria monocytogenes (3)
Entamoeba histolytica (3)
Sparus aurata (3)
Campylobacter jejuni (3)
Ctenopharyngodon idella (3)
Trichinella spiralis (2)
Bifidobacterium breve UCC2003 (2)
Canis lupus familiaris (2)
Saccharomyces cerevisiae (2)
Rhynchophorus phoenicis (1)
Phocaeicola vulgatus (1)

Organisms

Mus musculus (273)
Homo sapiens (33)
Drosophila melanogaster (26)
Danio rerio (22)
unidentified (9)
Caenorhabditis elegans (8)
Sus scrofa (5)
Rattus norvegicus (5)
Lactiplantibacillus plantarum (4)
Clostridium perfringens (4)
Gallus gallus (4)
Ascaris suum (3)
Enterococcus faecalis (3)
Ctenopharyngodon idella (3)
fish metagenome (3)
Escherichia coli (3)
human gut metagenome (3)
mouse gut metagenome (3)
Bos taurus (3)
Enterococcus faecium (3)
Tachysurus fulvidraco x Tachysurus vachelli (2)
Moniezia expansa (2)
Anguilla anguilla (2)
Aspergillus parasiticus (2)
Labrus bergylta (2)
zebrafish metagenome (2)
Enterococcus hirae (2)
shrimp gut metagenome (2)
Campylobacter jejuni (2)
pig gut metagenome (2)

Repository

ENA (855)
biostudies-arrayexpress (798)
MetaboLights (403)
geo (236)
MassIVE (121)
EGA (74)
pride (28)
jPOST (23)
iProX (15)
PeptideAtlas (11)
PanoramaPublic (5)
GNPS (3)
NODE (3)
PAXDB (3)
Cell Collective (2)
MetabolomicsWorkbench (2)
GPMDB (1)

Tissue

Intestine (6)
Epithelial cell (3)
SI (2)
Small intestine (2)
Pancreas (2)
Small intestine (2)
Gut (2)
Eye, brain, blood, bone marrow, spleen, thymus, intestines, liver, kidney, lung, and adrenal gland (1)
Large intestine (1)
Marrow (1)
Lung (1)
Digestive System (1)
Mucus (1)
Head (1)
Abdomen (1)
Skin mucus (1)
Midgut (1)
Gonad (1)
Intestinal juice (1)
Enterocyte (1)
Skin (1)
Feces (1)
Permanent cell line cell (1)
Liver (1)
Colon (1)

Disease

Normal (5)
Small cell lung cancer (2)
Carcinoma (2)
Colorectal Neoplasms (2)
Graft versus host disease (2)
Cytomegalovirus seropositive (1)
Prostate carcinoma lymph node metastasis (1)
Infected with IBDV strain F52/70 (1)
Hign immune pressure (1)
Germ-free (1)
Colorectal cancer (1)
Sb tumours (1)
Midgut carcinoid liver metastasis (1)
Unaffected (1)
Reference (1)
Murine hereditary hemochromatosis (1)
Diseases of the ear and mastoid process (1)
Small cell lung cancer (1)
Parastomal hernia with gangrene (1)
Fractures, Bone (1)
Polyps (1)
Diabetes Mellitus (1)
The study population will include patients with (1)
Mucositis (1)
Breast Neoplasms (1)
Lung Neoplasms (1)
Not Available (1)
Perinatal necrotizing enterocolitis (1)
Schistosomiasis (1)
Pancreatic cancer (1)

Technology Type

Mass spectrometry (221)
Mass spectrometry assay (166)
Mass Spectrometry (30)
NMR spectroscopy (16)
Shotgun proteomics (16)
Bottom-up proteomics (10)
Data-dependent acquisition (4)
ILLUMINA, NextSeq 500 (2)
ESI (2)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina MiSeq, Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
MSE (1)
All-ion fragmentation (1)
HDMSE (1)
SWATH MS (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (77)
NextSeq 500 (29)
Illumina HiSeq 2500 (24)
Illumina HiSeq 4000 (13)
Illumina HiSeq 2000 (12)
NextSeq 2000 (8)
NextSeq 550 (6)
Illumina NovaSeq X (5)
HiSeq X Ten (5)
Illumina MiSeq (4)
Axon- GenePix4000B (2)
ScanArray Express HT [PerkinElmer] (2)
Illumina Genome Analyzer II (2)
N/A (2)
TruSeq stranded Total RNA kit (1)
N/C (1)
Linux (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
Zephyr G3 NGS workstation (1)
MiRNeasy Micro kit (1)
Radial JawTM (1)
10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2 (1)
10X Genomics reagent kit (1)
QuantSeq 3’ mRNA-Seq Library Prep Kit FWD (Lexogen Gmbh, Vienna, Austria) (1)
MACS (1)
10x Genomics Chromium (1)
GeneTitan Multi-Channel (MC) Instrument (1)
Axon GenePix4000B (1)
Axon GenePix Pro scanner (1)
Scann Array Express (1)

Publication Date

2026 (228)
2025 (195)
2024 (130)
2013 (93)
2014 (92)
2010 (90)
2023 (89)
2012 (80)
2021 (77)
2022 (75)
2020 (67)
2015 (64)
2011 (56)
2019 (46)
2016 (46)
2017 (45)
2008 (42)
2018 (38)
2009 (36)
2007 (16)
2006 (12)
2005 (4)
2004 (2)
2027 (1)

UNIPROT ID/AC

S15A1_HUMAN (2)
SOAT2_HUMAN (2)
ZN335_HUMAN (2)
PG12B_HUMAN (2)
CDN2B_HUMAN (2)
CLRN3_HUMAN (2)
CDT1_HUMAN (2)
HNF1B_HUMAN (2)
RAB7B_HUMAN (2)
PRSR3_HUMAN (2)
MOTI_HUMAN (2)
PIWL4_HUMAN (2)
CA131_HUMAN (2)
EFCC1_HUMAN (2)
MUC17_HUMAN (2)
SLAI1_HUMAN (2)
NOS2_HUMAN (2)
RBM48_HUMAN (2)
APJ_HUMAN (2)
DAB1_HUMAN (2)
FLVC1_HUMAN (2)
CCKN_HUMAN (2)
SOX10_HUMAN (2)
LRC31_HUMAN (2)
GASP1_HUMAN (2)
MF2L2_HUMAN (2)
SLIK2_HUMAN (2)
LMTK1_HUMAN (2)
KCNA3_HUMAN (2)
SMIM4_HUMAN (2)

ENSEMBL ID

ENSECAG00000015904 (4)
ENSECAG00000000344 (4)
ENSECAP00000011734 (4)
ENSECAG00000022165 (4)
ENSECAG00000010963 (4)
ENSECAG00000008739 (4)
ENSECAG00000007714 (4)
ENSECAG00000021794 (4)
ENSECAG00000008615 (4)
ENSECAP00000017509 (4)
ENSECAP00000013223 (4)
ENSECAP00000007504 (4)
ENSECAP00000007368 (4)
ENSECAP00000003783 (4)
ENSECAP00000003495 (4)
ENSECAG00000024792 (4)
ENSECAG00000024571 (4)
ENSECAG00000021580 (4)
ENSECAG00000021499 (4)
ENSECAG00000019927 (4)
ENSECAG00000016475 (4)
ENSECAG00000015711 (4)
ENSECAG00000014858 (4)
ENSECAG00000014414 (4)
ENSECAG00000014224 (4)
ENSECAG00000012299 (4)
ENSECAG00000011854 (4)
ENSECAG00000011847 (4)
ENSECAG00000010481 (4)
ENSECAG00000010239 (4)

CHEBI ID

CHEBI:17368 (46)
CHEBI:15891 (45)
CHEBI:17596 (45)
CHEBI:16704 (44)
CHEBI:16359 (43)
CHEBI:30769 (43)
CHEBI:17568 (42)
CHEBI:15428 (41)
CHEBI:16919 (41)
CHEBI:15741 (40)
CHEBI:32816 (38)
CHEBI:17821 (37)
CHEBI:16737 (37)
CHEBI:30915 (36)
CHEBI:16708 (35)
CHEBI:16750 (35)
CHEBI:17750 (35)
CHEBI:15354 (35)
CHEBI:17687 (35)
CHEBI:15940 (34)
CHEBI:15971 (34)
CHEBI:17268 (33)
CHEBI:17154 (33)
CHEBI:24813 (33)
CHEBI:17895 (33)
CHEBI:15756 (33)
CHEBI:16040 (32)
CHEBI:18257 (32)
CHEBI:17754 (32)
CHEBI:16335 (32)

Metabolite Name

Hypoxanthine (82)
Creatine (80)
Taurine (78)
Inosine (77)
Uracil (76)
Adenosine (71)
Uridine (70)
Xanthine (69)
Creatinine (69)
Adenine (67)
Choline (65)
Thymidine (65)
Thymine (64)
Riboflavin (63)
Cytidine (63)
Guanosine (63)
Citrulline (61)
Guanine (61)
L-Phenylalanine (61)
Xanthosine (60)
Azelaic acid (59)
Betaine (58)
L-Tyrosine (58)
Kynurenic acid (56)
L-Histidine (54)
Deoxycholic acid (54)
Oleamide (54)
Histamine (54)
Cytosine (54)
4-Hydroxybenzaldehyde (53)

First Public Date

2024 (127)
2025 (125)
2026 (121)
2023 (90)
2021 (65)
2022 (64)
2014 (57)
2020 (48)
2019 (39)
2017 (34)
2013 (30)
2018 (25)
2016 (15)
2015 (14)
2012 (1)

Study status

Not yet recruiting (7)
Recruiting (3)
Active, not recruiting (2)
Not provided (2)
Completed (2)

Lab affiliation

Lab Head, Medical Mycology, Maynooth Univeristy (2)
Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, MA, 01605-2377, USA (2)
Département d'immunologie et de biologie cellulaire, Faculté de médecine et des sciences de la santé, Université de Sherbrooke (1)
Key Laboratory of Zoonosis Research, Ministry of Education, Institute of Zoonosis/ College of Veterinary Medicine,Jilin University, Changchun, China. (1)
Institute of Parasitology, University of Zurich, Switzerland (1)
Lab Head, Medical Mycology Lab (1)
Max Planck Institute for Biology of Ageing, Cologne, Germany. Institute of Healthy Ageing, and Department of Genetics, Evolution and Environment, UCL, London, UK. (1)
Dept. of Oncology-Pathology, Karolinska Institutet, SciLifeLab, Stockholm, Sweden (1)
Systematische Proteomics & Bioanalytik - Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel (1)
Case Center for Proteomics and Bioinformatics (1)
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal. Departamento de Patologia, Faculdade de Medicina, Universidade do Porto, Portugal. P.CCC Porto Comprehensive Cancer Center Raquel Seruca, Portugal. (1)
Henan University of Chinese Medicine (1)
Department of Molecular Medicine, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia (1)
Department of Biology Stanford University 371 Jane Stanford Way Stanford, CA 94305 (1)
Division of Biology and Biological Engineering, California Institute of Technology (1)
Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (1)
Department of Biological Sciences, Federal University of Ouro Preto, Minas Gerais, Brazil (1)
Lab head (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee DD1 5EH, United Kingdom (1)
CRUK Beatson Institute (1)
Bambino Gesu' Children's Hospital, Rome, Italy (1)
Nutrigenomics and Fish Growth Endocrinology Group, Institute of Aquaculture Torre de la Sal, Castellón, Spain (1)
Faculty of Chemistry, Chair of Drug and Cosmetics Biotechnology, Warsaw University of Technology, Warsaw, Poland (1)
Max-Delbrück-Centrum Berlin (1)
Institute of Oceanology, Chinese Academy of Sciences (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)

Keyword

Leucovorin (2)
Fluorouracil (2)
Retractor sponge (1)
Trendelenburg position (1)
Laparoscopic colorectal surgery (1)
21+ years old (1)
Address (1)
Amputation (1)
Area (1)
Arm (1)
Atheroscleroses (1)
Atherosclerotic (1)
Bariatrics (1)
Behavior Conditioning Therapy (1)
Behavior Modification (1)
Behavior Therapy (1)
Behavior Treatment (1)
Behavior or Life Style Modifications (1)
Behavioral (1)
Behavioral Conditioning Therapy (1)
Behavioral Modification (1)
Behavioral Therapy (1)
Behavioral Treatment (1)
Beta Cell (1)
Blood Pressure, High (1)
Blood Vessels (1)
Body Weight decreased (1)
Cancers (1)
Cardiac infarction (1)
Care, Health (1)

Classification

bacteria (34)
helminths (4)
fungi (3)
protozoa (1)

Modification

Not available (1)

Study type

Transcription profiling by array (500)
RNA-seq of coding RNA (125)
RNA-seq of coding RNA from single cells (52)
ChIP-seq (17)
Comparative genomic hybridization by array (12)
Unknown experiment type (11)
RNA-seq of non coding RNA (11)
Methylation profiling by array (9)
RNA-seq of total RNA (8)
Methylation profiling by high throughput sequencing (7)
Cell line - High-throughput sequencing (4)
Transcription profiling by tiling array (4)
MicroRNA profiling by array (4)
DNA-seq (4)
High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Animal - Single-cell sequencing (2)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
RIP-chip by array (1)
Animal - One-color microarray (1)
One-color microarray (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)

Release Date

2022 (297)
2023 (293)
2021 (277)
2025 (261)
2024 (260)
2020 (223)
2019 (165)
2014 (136)
2018 (132)
2013 (129)
2015 (125)
2017 (123)
2016 (122)
2012 (115)
2010 (115)
2011 (86)
2009 (61)
2008 (59)
2026 (55)
2007 (25)
2006 (19)
2005 (12)
1998 (8)
2002 (6)
2001 (4)
1999 (4)
2004 (3)
2000 (3)
2003 (2)

Location

United States (7)
China (3)
India (2)
Puerto Rico (1)
Netherlands (1)
United Kingdom (1)
Japan (1)

Previous page
1 / 493
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 493
Next page

Sort by:

Relevance

Page size

Metabolomics of lung injury after allogeneic hematopoietic cell transplantation - Small Intestines ICMS

Not available

ORGANISM(S): Mus musculus

ST001472 | MetabolomicsWorkbench

Metabolomics of lung injury after allogeneic hematopoietic cell transplantation - Small Intestines DI-FTMS

Not available

ORGANISM(S): Mus musculus

ST001471 | MetabolomicsWorkbench

Transcription profiling of mouse small intestines

Rb and E2F are thought to play antagonistic roles in celll proliferation. However, this model is based mostly from in vitro cell culture systems. We used small intestines to test this model in vivo. We found that deletion of E2f1-3 in the small intestine of mice suppressed the ectopic expression o...

ORGANISM(S): Mus musculus

2010-01-19 | E-GEOD-16454 | biostudies-arrayexpress

Proteomic analysis of paraffin-embedded intestines from Schistosoma mansoni infection in the mouse

This study intended to better understand the parasite-host dynamics in the mouse (C57BL/6) during experimental infection by S. mansoni, through proteomic analysis of paraffin-embedded intestinal tissues.

ORGANISM(S): Mus musculus (Mouse)

2026-09-14 | PXD079583 | Pride

Transcriptomics analysis of C. elegans intestines

PRJNA817173 | ENA

phytoplankton isolated from shellfish intestines metagenome

phytoplankton isolated from shellfish intestines metagenome Raw sequence reads

PRJNA689099 | ENA

The ChIP-Sequence data of STAT92E in Drosophila adult intestines

JAK/STAT pathway plays important roles in controlling Drosophila intestinal homeostasis and regulating the ISC proliferation and differentiation. However,the downstream targets of its transcription factor-STAT92E remain largely unknown.To further identify the regualtory mechanisms of the JAK/STAT pa...

ORGANISM(S): Drosophila melanogaster

2015-05-12 | E-GEOD-67346 | biostudies-arrayexpress

RNA-seq mouse intestines from PN, Germ-free, SPF and Antibiotics-treated mice

We hypothesized that there were genes involved in the maintenance of intestinal tolerance to commensal bacteria. These genes should meet the following criteria: expressed in intestines, upregulated in the presence of commensal bacteria and downregulated in absence of microbes. To find these genes, w...

ORGANISM(S): Mus musculus

2023-01-01 | E-MTAB-12215 | biostudies-arrayexpress

Vascular endothelial cells (VECs) and lymphatic endothelial cells (LECs) of small intestines

PRJNA414327 | ENA

RNA-Seq analysis of 9G8-RNAi intestines in Drosophila

PRJNA1191482 | ENA

Previous page
1 / 493
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 493
Next page

Sort by:

Relevance

Page size

4921 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Study status

Lab affiliation

Tags

Keyword

Classification

Modification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets