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TranscriptomicsTranscription profiling of rat ipsilateral rat hippocampus 3 hr and 24 hr following lateral cortical impact injury and compared to samples from sham-operated controls
RNA samples were prepared from ipsilateral rat hippocampi 3 hr and 24 hr following lateral cortical impact injury and compared to samples from sham-operated controls. For details please see Matzilevich et al., J Neurosci Res 2002 Mar 1;67(5):646-63.
ORGANISM(S): Rattus norvegicus 
2008-06-11 | E-GEOD-1911 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rat muscle samples from reinnervated subjects
Three male 8-week-old Wistar rats were used. The peroneal nerve of the animals was transected and sutured to the biceps femoris muscle. Four weeks later, the proximal stump was sutured to the distal stump. The animals survived for 8 weeks. All experiments were performed under Ketanest (ketamine hydr...
ORGANISM(S): Rattus norvegicus 
2007-11-03 | E-GEOD-2566 | biostudies-arrayexpress
GenomicsViral TRAP RNAseq Data from Ipsilateral and Contralateral Corticospinal Neurons in Mouse
Viral TRAP RNAseq Data from Ipsilateral and Contralateral Corticospinal Neurons in Mouse
PRJNA1163333 | ENA
TranscriptomicsTranscription profiling of mouse Anterior interpositus nucleus centred DCN from mice with of delayed-type eyeblink conditioned mice: 3-d paired training and sham negative control groups
Anterior interpositus nucleus (AIN) is a proposed site of memory formation of eyeblink conditioning. A large part of the underlying molecular events, however, remains unknown. To elucidate molecular mechanisms, we examined transcriptional changes in the AIN of mice trained with delayed-type eyeblink...
ORGANISM(S): Mus musculus 
2008-06-12 | E-GEOD-3651 | biostudies-arrayexpress
TranscriptomicsmRNA expression profiling in the spinal nerve ligation model of neuropathic pain in rats
Expression profiling of L4 and L5 Dorsal Root Ganglion (DRG) in the spinal nerve ligation model of neuropathic pain. The goal of the study was to identify genes involved in neuropathic pain This series of samples comprises of contralateral and ipsilateral L4 and L5 DRG tissue collected 4 weeks afte...
ORGANISM(S): Rattus norvegicus 
2011-10-17 | E-GEOD-24982 | biostudies-arrayexpress
GenomicsEpigenetic field cancerization in breast cancer using subject-matched tumor, ipsilateral-normal, and contralateral-normal tissues
Epigenetic field cancerization in breast cancer using subject-matched tumor, ipsilateral-normal, and contralateral-normal tissues
PRJNA553244 | ENA
TranscriptomicsRNAseq of ipsilateral mouse brain homogenates 1 day following collagenase-induced ICH vs naive controls
Intracerebral haemorrhage (ICH) is a major area of unmet clinical need. Inflammation is part of a secondary injury phase linked to both brain damage and repair. Here, we looked to identify the major molecular pathways promoting innate immune activation and recruitment in the first day of injury. To ...
ORGANISM(S): Mus musculus 
2025-08-13 | E-MTAB-15344 | biostudies-arrayexpress
MetabolomicsIncreased fatty acid metabolism and decreased glycolysis are hallmarks of metabolic reprogramming within microglia in degenerating white matter during recovery from experimental stroke
The goal of this study was to evaluate changes in metabolic homeostasis during the first 12 weeks of recovery in a distal middle cerebral artery occlusion mouse model of stroke. To achieve this goal, we compared the brain metabolomes of ipsilateral and contralateral hemispheres from aged male mice u...
2022-10-06 | MTBLS5543 | MetaboLights
TranscriptomicsTranscription profiling of mouse with unilateral cochlear removal in Cochlear Nucleus at P7 and P21
Deprivation of peripheral nerve input by cochlear removal in young mice results in dramatic neuron death in the cochlear nucleus (CN). The same manipulation in older mice does not result in significant loss. The molecular basis of this critical period of vulnerability remains largely unknown. Her...
ORGANISM(S): Mus musculus 
2008-06-13 | E-GEOD-5394 | biostudies-arrayexpress
Methylation profilingEpigenetic field cancerization in breast cancer using subject-matched tumor, ipsilateral-normal, and contralateral-normal tissues
Emerging work has demonstrated that histologically normal (non-tumor) tissue adjacent to breast tumor tissue shows evidence of molecular alterations related to tumorigenesis, referred to as field cancerization effects. Although changes in DNA methylation are known to occur early in breast carcinogen...
ORGANISM(S): Homo sapiens 
2020-07-10 | GSE133985 | GEO
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