Iqbal R R - OmicsDI

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Unknown (1313)
Transcriptomics (16)
Proteomics (10)
Genomics (8)
Metabolomics (3)
Models (1)

Organisms

Homo sapiens (19)
Mus musculus (6)
Caenorhabditis elegans (2)
Acyrthosiphon pisum (2)
Streptomyces coelicolor (1)
Staphylococcus aureus (1)
Gallus gallus (1)
Rattus norvegicus (1)
Human immunodeficiency virus (1)

Repository

biostudies-arrayexpress (16)
EGA (8)
pride (8)
MetaboLights (3)
BioModels (1)
iProX (1)
MassIVE (1)

Tissue

Blood (1)
Blood cell (1)
Cell culture (1)
Embryonic stem cell (1)
Heart (1)
Natural killer cell (1)
Saliva (1)
Salivary gland (1)

Disease

Acute leukemia (1)

Technology Type

Mass Spectrometry (8)
Bottom-up proteomics (4)
Mass spectrometry (3)
Shotgun proteomics (3)
Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2500 (1)
Affinity proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
TripleTOF 5600 (1)

Publication Date

2025 (3)
2022 (3)
2014 (3)
2023 (3)
2016 (2)
2013 (2)
2012 (2)
2010 (2)
2026 (2)
2024 (2)
2020 (2)
2021 (1)
2015 (1)
2008 (1)
2017 (1)

CHEBI ID

CHEBI:10049 (3)
CHEBI:10072 (3)
CHEBI:1026 (3)
CHEBI:1148 (3)
CHEBI:1157 (3)
CHEBI:132546 (3)
CHEBI:132958 (3)
CHEBI:134206 (3)
CHEBI:135063 (3)
CHEBI:139328 (3)
CHEBI:14314 (3)
CHEBI:143269 (3)
CHEBI:14336 (3)
CHEBI:1456 (3)
CHEBI:14973 (3)
CHEBI:15318 (3)
CHEBI:15346 (3)
CHEBI:15351 (3)
CHEBI:15354 (3)
CHEBI:15355 (3)
CHEBI:15356 (3)
CHEBI:15380 (3)
CHEBI:15422 (3)
CHEBI:15428 (3)
CHEBI:1547 (3)
CHEBI:15479 (3)
CHEBI:15531 (3)
CHEBI:15551 (3)
CHEBI:15553 (3)
CHEBI:15573 (3)

Metabolite Name

(Methylthio)acetate (2)
1-Aminoethylphosphonate (2)
10-Hydroxydecanoate (2)
2',3'-cCMP (2)
2,3-DPG (2,3-Disphospho-D-glycerate) (2)
2,3-Pyridinedicarboxylate (2)
2,4-Dihydroxypyrimidine-5-carboxylate (2)
2,5-Dihydroxybenzoate (2)
2-Amino-3-phosphonopropionate (2)
2-Aminoethylphosphonate (2)
2-Deoxyglucose 6-phosphate (2)
2-Deoxyribose 1-phosphate (2)
2-Furoate (2)
2-Hydroxy-4-methylpentanoate (2)
2-Hydroxybutyrate (2)
2-Hydroxyglutarate (2)
2-Hydroxyisobutyrate (2)
2-Hydroxyoctanoate (2)
2-Hydroxypentanoate (2)
2-Hydroxyphenylacetate (2)
2-Isopropylmalate (2)
2-Oxoadipate (2)
2-Oxobutyrate (2)
2-Oxoglutarate (2)
2-Oxoisopentanoate (2)
2-Oxooctanoate (2)
2-Quinolinecarboxylate (2)
2-Thiopheneacetate (2)
2PG (D-Glycerate 2-phosphate) (2)
3',5'-Cyclic dAMP (2)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (9)
RNA-seq of coding RNA (4)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (201)
2025 (183)
2024 (159)
2021 (150)
2023 (129)
2020 (101)
2018 (66)
2019 (64)
2016 (44)
2026 (34)
2017 (33)
2015 (30)
2012 (30)
2014 (27)
2009 (20)
2011 (16)
2008 (15)
2013 (13)
2010 (12)
2006 (1)
2005 (1)

Lab affiliation

Applied Proteomics Laboratory, Department of Biology, Maynooth University, Ireland. (2)
Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London (1)
Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA. (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Head of the Dioscuri Center of Chromatin Biology and Epigenomics Nencki Institute of Experimental Biology Polish Academy of Sciences 3 Pasteur Street, 02-093 Warsaw, Poland (1)
Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Oxford, UK (1)
UTHealth Houston, Texas, USA (1)

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Activation of the STAT3 signaling pathway is associated with poor survival in diffuse large B-cell lymphoma treated with R-CHOP.

Not available

S-EPMC3871513 | biostudies-literature

RNA-seq of small intestinal organoids treated with the control medium ENR (EGF, Noggin, R-spondin1) in the presence or absence of muscle supernatant

In order to unravel the impact of intestinal smooth muscle tissue on the intestinal epithelium, we isolated clean smooth muscle, cultured it for 24h in DMEM-F12, and collected the supernatant (muscle-SN). This supernatant was used to treat small intestinal organoids (made of intestinal epithelium), ...

ORGANISM(S): Mus musculus

2021-09-27 | E-MTAB-9181 | biostudies-arrayexpress

Bioprospecting of the novel isolate Microbacterium proteolyticum LA2(R) from the rhizosphere of Rauwolfia serpentina.

Not available

S-EPMC8913384 | biostudies-literature

Phytochemical analysis, radical scavenging and glioblastoma U87 cells toxicity studies of stem bark of buckthorn (Rhamnus pentapomica R. Parker).

Not available

S-EPMC10759440 | biostudies-literature

Antibacterial efficacy of synthesized silver nanoparticles of Microbacterium proteolyticum LA2(R) and Streptomyces rochei LA2(O) against biofilm forming meningitis causing microbes.

Not available

S-EPMC10011373 | biostudies-literature

Cytochrome c oxidase dysfunction enhances phagocytic function and osteoclast formation in macrophages.