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TranscriptomicsRegulation of initiation of chromosome replication by oriC-proximal DnaA-box clusters in Bacillus subtilis
Comparison of transcriptions in wild_type, delta-6 (deletion of six DnaA-box clusters (DBCs)), delta-5 and delta-DBC[yydA-yycS] strains, to see effect of the DBCs on transcription of neighboring genes and DnaA-regulated genes.
ORGANISM(S): Bacillus subtilis 
2011-07-01 | E-MEXP-3069 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Bacillus subtilis to identify Noc protein binding sites
Coordination of chromosome segregation and cytokinesis is crucial for efficient cell proliferation. In Bacillus subtilis the nucleoid occlusion protein Noc protects chromosomes by associating with the chromosome and preventing cell division in its vicinity. Using protein localization, ChAP-on-Chip a...
ORGANISM(S): Bacillus subtilis 
2009-07-01 | E-MEXP-2133 | biostudies-arrayexpress
TranscriptomicsNsrR and ResD binding in Bacillus subtilis
The direct roles of the NO-sensitive NsrR repressor and the ResD response regulator in transcriptional control in Bacillus subtilis
ORGANISM(S): Bacillus subtilis 
2013-11-22 | E-MEXP-3882 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Bacillus subtilis abrB, abh, and abrB abh deletion mutant strains
Transcriptome analysis of abrB, abh, and abrB abh deletion mutant strains
ORGANISM(S): Bacillus subtilis 
2010-12-24 | E-MEXP-2776 | biostudies-arrayexpress
TranscriptomicsChAP-chip by array of Bacillus subtilis to obtain genome-wide profiles of AbrB and Abh
Genome-wide binding profiles of AbrB and Abh was determined by use of ChAP (chromatin affinity purification)-chip method, modified method of ChIP-chip. Genetic modification was undertaken to abrB and abh genes to translationally fuse 2HC (coding sequence of twelve histidine and chitin binding domai...
ORGANISM(S): Bacillus subtilis 
2010-12-24 | E-MEXP-2774 | biostudies-arrayexpress
UnknownGenome-Wide Analysis of ResD, NsrR, and Fur Binding in Bacillus subtilis during Anaerobic Fermentative Growth by In Vivo Footprinting.
Not available
S-EPMC5472814 | biostudies-literature
TranscriptomicsChromatin Affinity Precipitation-chiop of B. subtilis to gain insight into the invivo dynamics of RNA polymerase
To obtain an insight into the in vivo dynamics of RNA polymerase (RNAP) on the B. subtilis genome, we analyzed the distribution of ?A and ? subunits of RNAP and the NusA elongation factor on the genome in exponentially growing cells, using the ChAP (Chromatin Affinity Precipitation)-chip method. In ...
ORGANISM(S): Bacillus subtilis 
2010-06-29 | E-MEXP-2649 | biostudies-arrayexpress
TranscriptomicsChIP-chip analysis for H-NS binding sites in wild type and hhaydgT cells
Analysis of the distribution of the binding regions of the H-NS protein in E. coli W3110 and W3110hhaydgT mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-04 | E-MEXP-3812 | biostudies-arrayexpress
TranscriptomicsChAP-chip analysis of Hha binding regions in wild type and hnsstpA E. coli cells
The analysis of the distribution of Hha binding regions (His-Hha were expressed from pQE plasmid) on E. coli chromosome in E. coli W3110 (wild type) and hns/stpA mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-02 | E-MEXP-3813 | biostudies-arrayexpress
UnknownHyperphosphorylation of DegU cancels CcpA-dependent catabolite repression of rocG in Bacillus subtilis.
Not available
S-EPMC4348106 | biostudies-literature
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