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ProteomicsMoss secreted peptidome - Salicylic acid influences the protease activity and posttranslation modifications of the secreted peptides in the moss Physcomitrella patens
Plant secretome comprise dozens of secreted proteins and peptide hormones. However, little is known about peptide composition of plant secretome as well as proteases responsible for peptide pools generation. While the majority of studies focuses on the target detection and characterization of speci...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2019-01-02 | PXD010964 | Pride
Physcomitreella patens Sa Lc-ms/ms 
ProteomicsMoss endogenous peptides, LC-MS/MS
Short (<100 codons) open reading frames (sORFs) are common features of all genomes. Proof of translation of sORFs is an important step towards finding of functional sORF-encoded peptides (SEPs). We verified translation of our predicted sORFs using mass-spectrometry (MS) analysis which is often cons...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2019-08-08 | PXD007922 | Pride
Moss physcomitrella patens tissues 
ProteomicsMoss Physcomitrella paten endogenous peptides, LC-MS/MS, part 2
Short (<100 codons) open reading frames (sORFs) are common features of all genomes. Proof of translation of sORFs is an important step towards finding of functional sORF-encoded peptides (SEPs). We verified translation of our predicted sORFs using mass-spectrometry (MS) analysis which is often cons...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2019-08-08 | PXD007923 | Pride
Moss tissues 
ProteomicsMoss proteomes, LC-MS/MS - proteome data analysis
Short (<100 codons) open reading frames (sORFs) are common features of all genomes. Proof of translation of sORFs is an important step towards finding of functional sORF-encoded peptides (SEPs). We verified translation of our predicted sORFs using mass-spectrometry (MS) analysis which is often cons...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2019-08-08 | PXD007973 | Pride
Moss tissue 
ProteomicsPhyscomitrella patens secreted endogenous peptides
We used mass spectrometry to comprehensively analyze the endogenous peptide pools generated from functionally active proteins in the secretome fromthe model plant Physcomitrella patens. Treatment with the plant stress hormones methyl jasmonate and salicylic acid induced significant differential chan...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2018-12-13 | PXD009530 | Pride
Phytohormones Endogenous peptides Secretome Lc-ms/ms Physcomitrella patens 
TranscriptomicsSW480R
SW480R is an APC mut, KRAS mut, P53 mut CRC cell line. PROX1 transcription factor, target of Wnt pathway in CRC, is our protein of interest.SW480R cells are PROX1 positive. We suppressed through siRNA transfection the expression of PROX1 protein or non-targeting siRNA, using two different siRNA. Aft...
ORGANISM(S): Homo Sapiens 
2014-09-18 | E-MTAB-2021 | biostudies-arrayexpress
TranscriptomicsDLD1
DLD1 is an APC mut, KRAS mut, P53 mut CRC cell line. PROX1 transcription factor, target of Wnt pathway in CRC, is our protein of interest.DLD1 cells are PROX1 negative. We overexpressed through lentiviral expression PROX1 protein or the empty vector psd44, through selection of the cells in puromycin...
ORGANISM(S): Homo Sapiens 
2014-09-18 | E-MTAB-2020 | biostudies-arrayexpress
ProteomicsThe pathogenesis of Guillain-Barre syndrome: peptidomic profiling of physiological fluids
Acute inflammatory demyelinating polyneuropathy (AIDP) - one of the forms of Guillain-Barre syndrome (GBS) - is a rare and severe disorder of the peripheral nervous system that also has an unknown etiology. One of the hallmarks of AIDP pathogenesis is a significantly elevated cerebrospinal fluid (CS...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-20 | MSV000079963 | MassIVE
ProteomicsThe pathogenesis of Guillain-Barre syndrome: immunological profiling of physiological fluids
Acute inflammatory demyelinating polyneuropathy (AIDP) - one of the forms of Guillain-Barre syndrome (GBS) - is a rare and severe disorder of the peripheral nervous system that also has an unknown etiology. One of the hallmarks of AIDP pathogenesis is a significantly elevated cerebrospinal fluid (CS...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-20 | MSV000079941 | MassIVE
UnknownSARS-CoV-2 vaccination modelling for safe surgery to save lives: data from an international prospective cohort study.
Not available
S-EPMC7995808 | biostudies-literature
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