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ProteomicsRapid and deep profiling of human induced pluripotent stem cell proteome by one-shot nanoLC-MS/MS analysis with meter-scale monolithic silica columns
Proteome analyses of human induced pluripotent cells (iPSC) were carried out by liquid chromatography–tandem mass spectrometry systems using meter-scale monolithic silica-C18 capillary columns without pre-fractionation. Tryptic peptides from five different iPSC lysates and three different fibroblast...
ORGANISM(S): Homo sapiens (Human) 
2013-02-07 | PXD000071 | Pride
One-shot Ips Proteome Lc-ms/ms analysis 
ProteomicsDifferences of uniquely identified peptides between ddaPASEF and diaPASEF
Recent advancements in mass spectrometry-based proteomics have made it possible to conduct comprehensive protein analysis. In particular, the emergence of the data-independent acquisition (DIA) method powered by machine learning has significantly improved protein identification effi-ciency. However,...
ORGANISM(S): Homo Sapiens (human) 
2024-12-01 | PXD056754 | JPOST Repository
OtherRapid and Deep Profiling of Human Induced Pluripotent Stem Cell Proteome by One-shot NanoLC-MS MS Analysis with Meter-scale Monolithic Silica Columns
PXD ID: PXD000071. Experiment: 120206ry_aHDF1419-P10_3, data file: 120206ry_aHDF1419-P10_3_1-120206ry011.mgf. Data published as part of J Proteome Res. 2013 Jan 4;12(1):214-21 [[PubMed]]. From the Abstract: {{i}}Proteome analyses of human induced pluripotent stem cells (iPSC) were carried out on a l...
ORGANISM(S): Human, Human_adenovirus_54, Human_adenovirus_a, Human_adenovirus_b, Human_adenovirus_c, Human_adenovirus_d, Human_adenovirus_e, Human_adenovirus_f, Human_adenovirus_g, Human_astrovirus, Human_bocavirus, Human_bocavirus_2, Human_bocavirus_3, Human_bocavirus_4, Human_coronavirus_229e, Human_coronavirus_hku1, Human_coronavirus_nl63, Human_coronavirus_oc43, Human_cosavirus_a, Human_cosavirus_b, Human_cosavirus_d, Human_cosavirus_e, Human_enteric_coronavirus_4408, Human_enterovirus_100, Human_enterovirus_a, Human_enterovirus_b, Human_enterovirus_c, Human_enterovirus_d, Human_erythrovirus_v9, Human_herpesvirus_1, Human_herpesvirus_2, Human_herpesvirus_3, Human_herpesvirus_4_type_1, Human_herpesvirus_4_type_2, Human_herpesvirus_5, Human_herpesvirus_6a, Human_herpesvirus_6b, Human_herpesvirus_7, Human_herpesvirus_8_type_p, Human_immunodeficiency_virus_1, Human_immunodeficiency_virus_2, Human_metapneumovirus, Human_papillomavirus_fa75_ki88_03, Human_papillomavirus_rtrx7, Human_papillomavirus_type_10, Human_papillomavirus_type_100, Human_papillomavirus_type_101, Human_papillomavirus_type_103, Human_papillomavirus_type_104, Human_papillomavirus_type_105, Human_papillomavirus_type_108, Human_papillomavirus_type_109, Human_papillomavirus_type_112, Human_papillomavirus_type_113, Human_papillomavirus_type_16, Human_papillomavirus_type_24, Human_papillomavirus_type_26, Human_papillomavirus_type_32, Human_papillomavirus_type_34, Human_papillomavirus_type_4, Human_papillomavirus_type_41, Human_papillomavirus_type_48, Human_papillomavirus_type_49, Human_papillomavirus_type_5, Human_papillomavirus_type_50, Human_papillomavirus_type_53, Human_papillomavirus_type_60, Human_papillomavirus_type_63, Human_papillomavirus_type_6b, Human_papillomavirus_type_7, Human_papillomavirus_type_71, Human_papillomavirus_type_88, Human_papillomavirus_type_9, Human_papillomavirus_type_92, Human_papillomavirus_type_96, Human_papillomavirus_type_98, Human_papillomavirus_type_99, Human_papillomavirus___1, Human_papillomavirus___18, Human_papillomavirus___2, Human_papillomavirus___54, Human_papillomavirus___61, Human_papillomavirus___cand90, Human_parainfluenza_virus_1, Human_parainfluenza_virus_2, Human_parainfluenza_virus_3, Human_parechovirus, Human_parvovirus_4, Human_parvovirus_b19, Human_picobirnavirus, Human_respiratory_syncytial_virus, Human_rhinovirus_a, Human_rhinovirus_b, Human_rhinovirus_c, Human_tmev_like_cardiovirus, Human_t_lymphotropic_virus_1, Human_t_lymphotropic_virus_2, Human_t_lymphotropic_virus_4 
GPM11210010668 | GPMDB
Resource Reanalysis 
ProteomicsE.coli and Human proteome
To measure quantification accuracy, we generated two proteome samples of E.coli and human cell lysate. E.coli tryptic peptides were tagged with four different labels of reporter ions (m/z: 114, 115, 116 and 117). These labeled peptides were mixed at the following ratios: 114:115 = 10:1, 114:117 = 5:...
ORGANISM(S): Homo Sapiens (human) Escherichia Coli 
2019-05-14 | PXD011913 | JPOST Repository
ProteomicsWNT7 Promotes Proliferation of Pancreatic Progenitor Cells Differentiated from Human Pluripotent Stem Cells through Non-Canonical Wnt Signaling Pathway
A small molecule, AT7867, promotes proliferation of human pluripotent stem cell-derived pancreatic progenitor cells (PPCs), yet detailed mechanisms of its proliferative effect were not fully understood. Here, we performed cell-based siRNA screening on a subset of genes to reveal that WNT7B is a grow...
ORGANISM(S): Homo Sapiens (human) 
2022-03-27 | PXD018222 | JPOST Repository
ProteomicsWNT7 Promotes Proliferation of Pancreatic Progenitor Cells Differentiated from Human Pluripotent Stem Cells through Non-Canonical Wnt Signaling Pathway
A small molecule, AT7867, promotes proliferation of human pluripotent stem cell-derived pancreatic progenitor cells (PPCs), yet detailed mechanisms of its proliferative effect were not fully understood. Here, we performed cell-based siRNA screening on a subset of genes to reveal that WNT7B is a grow...
ORGANISM(S): Homo Sapiens (human) 
2021-07-01 | PXD018221 | JPOST Repository
ProteomicsiPSC-HDF phosphoproteome
We analyzed iPSC (201B7) and HDF (HDF1388) by global whole phosphoproteome analysis. iTRAQ was used for relative quantification between the two cell types. We did biological triplicate analyses.
ORGANISM(S): Homo Sapiens (human) 
2019-05-14 | PXD012367 | JPOST Repository
ProteomicsiPSC-HDF proteome
We analyzed iPSC (201B7) and HDF (HDF1388) by global whole proteome analysis. iTRAQ was used for relative quantification between the two cell types. We did biological triplicate analyses with technical triplicate analyses.
ORGANISM(S): Homo Sapiens (human) 
2019-05-14 | PXD012368 | JPOST Repository
ProteomicsDifferences of phosphoproteome between c-MYC and L-MYC during cellular reprogramming
MYC proteins (c-MYC, n-MYC, and L-MYC) are essential for improving reprogramming efficiency. L-MYC can generate iPSC colonies more efficiently than c-MYC. Still, it remains unknown what is the functional differences between c-MYC and L-MYC during cellular reprogramming. In this study, we performed p...
ORGANISM(S): Homo Sapiens (human) 
2022-01-08 | PXD027078 | JPOST Repository
ProteomicsDifferences of proteome between c-MYC and L-MYC during cellular reprogramming
MYC proteins (c-MYC, n-MYC, and L-MYC) are essential for improving reprogramming efficiency. L-MYC can generate iPSC colonies more efficiently than c-MYC. Still, it remains unknown what is the functional differences between c-MYC and L-MYC during cellular reprogramming. In this study, we performed p...
ORGANISM(S): Homo Sapiens (human) 
2022-01-08 | PXD027079 | JPOST Repository
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