Jackson David D

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Unknown (302)
Transcriptomics (81)
Genomics (28)
Proteomics (23)
Models (11)
Metabolomics (7)
Genomic (1)
Other (1)

Organisms

Homo sapiens (56)
Mus musculus (45)
Zea mays (4)
Caenorhabditis elegans (4)
Rattus norvegicus (4)
Arabidopsis thaliana (3)
Bradyrhizobium diazoefficiens USDA 110 (2)
Neisseria gonorrhoeae (2)
Danio rerio (2)
Rhipicephalus microplus (1)
unidentified (1)
Francisella tularensis (1)
Escherichia coli (1)
Cereibacter sphaeroides 2.4.1 (1)
Saccharomyces cerevisiae (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (86)
EGA (23)
pride (16)
FAIRDOMHub (11)
MetaboLights (7)
MassIVE (4)
PanoramaPublic (2)
dbGaP (1)
geo (1)
ENA (1)

Tissue

Cell culture (5)
Epithelial cell (3)
Permanent cell line cell (3)
Brain (1)
Fibroblast (1)
Heart (1)
Kidney (1)
Photosynthetic cell (1)
Primary cell (1)
Synapse (1)
Whole body (1)

Disease

Porphyria NOS (2)
Alzheimer's disease (1)
Breast cancer (1)
Cardiovascular system disease (1)
Developmental and epileptic encephalopathy 9 (1)
Ovary adenocarcinoma (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (11)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
Illumina HiSeq 2000 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Mass spectrometry assay (1)
SWATH MS (1)

Instrument Platform

Q Exactive (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
NextSeq 500 (2)
HiSeq 2000 (1)
Other (1)
NextSeq 2000 (1)
Ion Torrent S5 XL (1)
Illumina HiSeq 2000 (1)
Q-Exactive (1)
Xevo G2-S QTof (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2012 (15)
2014 (14)
2015 (13)
2011 (13)
2013 (12)
2010 (8)
2021 (7)
2016 (6)
2023 (6)
2008 (5)
2024 (4)
2022 (4)
2025 (4)
2018 (3)
2009 (3)
2017 (2)
2007 (2)
2005 (2)
2020 (2)
2026 (1)
2019 (1)

CHEBI ID

CHEBI:15354 (3)
CHEBI:15891 (3)
CHEBI:17084 (3)
CHEBI:17750 (3)
CHEBI:17964 (3)
CHEBI:27389 (3)
CHEBI:30915 (3)
CHEBI:32816 (3)
CHEBI:37084 (3)
CHEBI:116314 (2)
CHEBI:138368 (2)
CHEBI:145223 (2)
CHEBI:15366 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15676 (2)
CHEBI:15724 (2)
CHEBI:15727 (2)
CHEBI:15741 (2)
CHEBI:15746 (2)
CHEBI:15753 (2)
CHEBI:15999 (2)
CHEBI:16010 (2)
CHEBI:16113 (2)
CHEBI:16135 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16359 (2)
CHEBI:16411 (2)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (1)
1,3-Diaminopropane (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-Methylnicotinamide (1)
1-arachidonoyl-GPI (20:4) (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPI (18:2) (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenosine (1)
1-methylguanidine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6) (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)

First Public Date

2013 (1)

Study type

Transcription profiling by array (60)
RNA-seq of coding RNA (13)
ChIP-seq (3)
Genotyping by array (2)
Proteomic profiling by array (2)
RNA-seq of non coding RNA (2)
High-throughput sequencing (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (47)
2021 (45)
2025 (33)
2023 (32)
2024 (26)
2011 (24)
2014 (21)
2020 (21)
2015 (20)
2018 (18)
2016 (17)
2013 (17)
2012 (13)
2019 (13)
2017 (11)
2010 (9)
2026 (6)
2008 (6)
2009 (5)
2007 (2)
2005 (2)

Lab affiliation

Calico Life Sciences (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
Department of Biochemistry & Pharmacology, University of Melbourne, Australia (1)
Department of Biochemistry and Molecular Biology, The Bio21 Institute, The University of Melbourne, 3000, Melbourne, Australia (1)
Department of Biological Sciences University of Delaware Newark, DE, USA. (1)
Department of Chemical Physiology and Biochemistry Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Department of Molecular & Medical Genetics Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Department of Molecular Genetics and Cell Biology and Ludwig Center for Metastasis Research, The University of Chicago, Chicago IL (1)
Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, USA. (1)
Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR USA (1)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (1)
School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, United Kingdom. (1)
The University of Edinburgh 1 George Square, Edinburgh EH8 9JZ, UK (1)
University of Chicago, Department of Molecular Genetics and Cell Biology, Chicago IL 60637, USA (1)
University of Melbourne, Melbourne, Australia (1)

Tags

xref:PubMed:20668672 (1)

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D-Dimer in African Americans: Whole Genome Sequence Analysis and Relationship to Cardiovascular Disease Risk in the Jackson Heart Study.

Not available

S-EPMC5658238 | biostudies-literature

Physical Activity and Incident Hypertension in African Americans: The Jackson Heart Study.

Not available

S-EPMC5302780 | biostudies-literature

Chaos in Schools and Its Relationship to Adolescent Risk Behaviors.

Not available

S-EPMC7904964 | biostudies-literature

Control of RNA stability by NrrF, an iron-regulated small RNA in Neisseria gonorrhoeae.

Regulation of gene expression by small non-coding RNAs (sRNAs) plays a critical role in bacterial response to physiological stresses. NrrF, a trans-acting sRNA in Neisseria meningitidis and Neisseria gonorrhoeae, has been shown in the meningococcus to indirectly control, in response to iron (Fe) av...

ORGANISM(S): Neisseria gonorrhoeae

2013-09-27 | E-GEOD-48526 | biostudies-arrayexpress

Genetically diverse mouse platform to xenograft cancer cells.

Not available

S-EPMC9459392 | biostudies-literature

[E-MTAB-305] ncRNA expression, including snoRNAs, across 11 tissues using polyA-neutral amplification

ncRNA expression, including snoRNAs, across 11 tissues using polyA-neutral amplification Non-coding RNAs (ncRNAs) are an essential class of molecular species that have been difficult to monitor on high throughput platforms due to frequent lack of polyadenylation. Using a polyadenylation-neutral ampl...

ORGANISM(S): Homo sapiens

2010-12-04 | GSE25028 | GEO

Dichlorvos exposure results in large scale disruption of energy metabolism in the liver of the zebrafish, Danio rerio

Background: Exposure to dichlorvos (DDVP), an organophosphorus pesticide, is known to result in neurotoxicity as well as other metabolic perturbations. However, the molecular causes of DDVP toxicity are poorly understood, especially in cells other than neurons and muscle cells. To obtain a better un...

ORGANISM(S): Danio rerio

2015-11-05 | E-GEOD-66257 | biostudies-arrayexpress

Sequential multi-omics analysis identifies clinical phenotypes and predictive biomarkers for long COVID

The post-acute sequelae of COVID-19 (PASC), also known as long COVID, is often associated with debilitating symptoms and adverse multisystem consequences. We obtain plasma samples from 117 individuals during and 6 mth following their acute phase of infection to comprehensively profile and as...

2024-02-23 | MTBLS7337 | MetaboLights

The influence of genetic susceptibility and calcium plus vitamin D supplementation on fracture risk.

Not available

S-EPMC5366049 | biostudies-literature

Factors associated with D-dimer levels in HIV-infected individuals.

Not available

S-EPMC3953205 | biostudies-literature