Jackson S S - OmicsDI

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Unknown (9020)
Transcriptomics (583)
Proteomics (197)
Genomics (149)
Metabolomics (50)
Genomic (15)
Models (6)
Methylation profiling (1)
Other (1)

Organisms

Mus musculus (466)
Homo sapiens (204)
Arabidopsis thaliana (13)
Zea mays (7)
Rattus norvegicus (6)
Mammalia (5)
Saccharomyces cerevisiae (4)
Bradyrhizobium diazoefficiens USDA 110 (2)
Mus musculus domesticus (2)
mouse gut metagenome (2)
Caenorhabditis elegans (2)
Canis lupus familiaris (2)
Pseudomonas aeruginosa (2)
Drosophila melanogaster (2)
Danio rerio (2)
Staphylococcus aureus subsp. aureus RN4220 (1)
Salmonella enterica subsp. enterica (1)
Haliotis asinina (1)
Mustela putorius furo (1)
Francisella tularensis subsp. tularensis SCHU S4 (1)
Rhipicephalus microplus (1)
Arachis hypogaea (1)
Plasmodium knowlesi (1)
Mus musculus musculus x M. m. domesticus (1)
Ambystoma mexicanum (1)
Trypanosoma vivax (1)
unidentified (1)
Macaca fascicularis (1)
Francisella tularensis (1)
Bacillus subtilis (1)

Organisms

Mus musculus (19)
Homo sapiens (13)
Staphylococcus epidermidis (2)
Mus (1)
soil metagenome (1)

Repository

biostudies-arrayexpress (666)
pride (132)
EGA (54)
MetaboLights (48)
ENA (43)
MassIVE (16)
dbGaP (15)
geo (14)
BioModels (6)
jPOST (3)
GNPS (2)
EVA (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (16)
Brain (9)
Epithelial cell (8)
Heart (7)
Kidney (7)
Photosynthetic cell (7)
Blood plasma (5)
Lung (5)
Blood cell (4)
Bone marrow (4)
Fibroblast (3)
Macrophage (3)
Permanent cell line cell (3)
Primary cell (3)
Retina (3)
Retinal pigment epithelial cell (3)
Blood (2)
Cell suspension culture (2)
Embryo (2)
Embryonic stem cell (2)
Leaf (2)
Retinal pigment epithelium cell (2)
Skeletal muscle (2)
Urine (2)
Venom (2)
Abdominal adipose tissue (1)
Amniotic fluid (1)
Aorta (1)
Saccharomyces cerevisiae metabolite (1)
T cell (1)

Disease

Disease free (6)
Cardiovascular system disease (5)
Normal (3)
Breast cancer (3)
Porphyria NOS (2)
Acute leukemia (2)
Hypotension (1)
Alopecia (1)
Cryptozoospermia (1)
Spinal muscular atrophy (1)
TAC operated 1 hour after surgery (1)
Dystrophic (1)
None- acute control (1)
Hyperglycaemic (1)
Cerebral malaria (1)
Tumor (1)
None- Acute Control (1)
3-methylglutaconic aciduria type 9 (1)
Acute myeloid leukemia (1)
Alpers-Huttenlocher syndrome (1)
Alzheimer's disease (1)
Bone osteosarcoma (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Centronuclear myopathy 5 (1)
Chronic myeloid leukemia (1)
Chronic obstructive pulmonary disease (1)
Developmental and epileptic encephalopathy 1 (1)
Developmental and epileptic encephalopathy 9 (1)
Diffuse midline glioma (1)

Technology Type

Mass Spectrometry (132)
Shotgun proteomics (77)
Mass spectrometry (37)
Affinity purification coupled with mass spectrometry proteomics (20)
Bottom-up proteomics (17)
Gel-based experiment (15)
Data-dependent acquisition (10)
NMR spectroscopy (6)
Data-independent acquisition (6)
Top-down proteomics (5)
Mass spectrometry assay (4)
SWATH MS (3)
Illumina HiSeq 2000 (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Illumina HiSeq 2500 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
MSE (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

Illumina HiSeq 2500 (15)
NextSeq 500 (13)
Illumina HiSeq 2000 (9)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 4000 (6)
NextSeq 550 (4)
10x Genomics Chromium Controller (3)
NextSeq 2000 (3)
FUJIFILM BAS-5000 scanning hardware (2)
Other (2)
GenePix 4000B [Axon Instruments] (2)
Axon GenePix 4000B scanning hardware (2)
Illumina NovaSeq X (2)
Mastercycler pro S Thermocyler (Eppendorf); 2100 Bioanalyzer (Agilent) (1)
2100 Bioanalyzer (Agilent); Axio Imager.Z2 (ZEISS) (1)
CryoStar NX70 Cryostat (Epredia) (1)
Quiagen Mini prep kit (1)
Axon-GenePix 4100A (1)
HiSeq 2000 (1)
Axon Instruments GenePix 4000B scanner (1)
MouseWG-6_V2_0_R3_11278593_A (1)
GeneChip 3000 7G scanner (Affymetrix) (1)
GentleMACS Dissociator with M tubes (Miltenyi Biotec), QIAzol Lysis Reagent (Qiagen), and RNeasy Microarray Tissue Mini Kit with optional DNase treatment (Qiagen) (1)
Hybridization Cocktails, Mouse Transcriptome 1.0 ST GeneChips, GeneChip Hybridization oven 645 (all Affymetrix) (1)
Bioanalyzer (Agilent), Nanodrop (Thermo Fisher Scientific), and Affymetrix WT Plus Reagent Kit (1)
Illumina Genome Analyzer II (1)
NA (1)
Ion Torrent Proton (1)
HiSeq X Ten (1)
Illumina MiSeq (1)

Publication Date

2015 (97)
2014 (79)
2013 (78)
2010 (58)
2012 (55)
2016 (52)
2011 (51)
2009 (47)
2023 (39)
2024 (35)
2022 (35)
2018 (35)
2008 (33)
2021 (31)
2007 (31)
2025 (27)
2020 (22)
2019 (22)
2026 (18)
2005 (16)
2017 (11)
2006 (7)
2004 (6)
2003 (1)

UNIPROT ID/AC

P10523 (2)
Q15465 (2)
Q13635 (2)
P18537 (2)
P49841 (2)
P56704 (2)
P01133 (2)
Q02248 (1)
Q86TH3 (1)
Q147T7 (1)
Q99835 (1)
B4NUI3 (1)
Q92793 (1)
Q3MHS8 (1)
Q96BI3 (1)
Q5S414 (1)
O70263 (1)
Q6SPF9 (1)
Q9V6X7 (1)
Q6IAD4 (1)
Q9UBV2 (1)
P28159 (1)
Q92585 (1)
P49757 (1)
Q9BR09 (1)
Q8TE56 (1)
Q8NES3 (1)
Q9NZ42 (1)
P07207 (1)
P08646 (1)

CHEBI ID

CHEBI:15741 (19)
CHEBI:15891 (19)
CHEBI:18012 (19)
CHEBI:15354 (19)
CHEBI:15428 (17)
CHEBI:27897 (17)
CHEBI:30769 (17)
CHEBI:18237 (16)
CHEBI:22660 (16)
CHEBI:16811 (16)
CHEBI:16919 (16)
CHEBI:17368 (16)
CHEBI:25094 (15)
CHEBI:18186 (15)
CHEBI:28044 (15)
CHEBI:17154 (15)
CHEBI:27266 (15)
CHEBI:16449 (15)
CHEBI:32816 (15)
CHEBI:16737 (15)
CHEBI:17596 (15)
CHEBI:16761 (12)
CHEBI:15422 (11)
CHEBI:16113 (9)
CHEBI:15996 (7)
CHEBI:114785 (2)
CHEBI:25750 (2)
CHEBI:36080 (2)
CHEBI:18287 (1)
CHEBI:17552 (1)

Metabolite Name

Phenylalanine (10)
Isoleucine (10)
Creatinine (10)
Creatine (10)
AMP (9)
Choline (9)
Taurine (9)
Lysine (9)
Inosine (9)
Glutamate (8)
Leucine (8)
Valine (8)
Methionine (8)
Tyrosine (8)
Alanine (8)
Threonine (8)
Succinate (8)
Glutamine (8)
Uric acid (8)
CMP (7)
ADP (7)
Kynurenic acid (7)
Serine (7)
Linoleic acid (7)
Citrate (7)
Tryptophan (7)
Hypoxanthine (7)
Glycine (6)
Tryptophan (6)
Taurine (6)

IsPrivate

False (6)

First Public Date

2018 (14)
2014 (9)
2025 (5)
2023 (3)
2026 (2)
2024 (2)
2022 (2)
2020 (2)
2019 (2)
2016 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (6)

Study type

Transcription profiling by array (386)
RNA-seq of coding RNA (98)
Proteomic profiling by array (41)
ChIP-seq (31)
Methylation profiling by high throughput sequencing (15)
Other (14)
Unknown experiment type (11)
Methylation profiling by array (10)
RNA-seq of coding RNA from single cells (9)
RNA-seq of non coding RNA (8)
Comparative genomic hybridization by array (6)
RNA-seq of total RNA (6)
Genotyping by array (5)
DNA-seq (5)
Antigen profiling (4)
MicroRNA profiling by array (3)
Animal - High-throughput sequencing (2)
Transcription profiling by SAGE (1)
Baseline (1)
Differential (1)
ChIP-chip by tiling array (1)
Animal - Single-cell sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Whole chromosome random sequencing (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
CUT&RUN (1)

Release Date

2021 (959)
2022 (947)
2023 (913)
2025 (810)
2024 (794)
2020 (730)
2019 (586)
2018 (537)
2015 (499)
2016 (471)
2017 (468)
2014 (368)
2013 (287)
2012 (242)
2011 (228)
2010 (187)
2009 (165)
2026 (118)
2008 (116)
2007 (81)
2005 (43)
2006 (42)
2004 (31)
2003 (19)
2002 (13)
2001 (10)
2000 (9)
1999 (6)
1998 (5)
1997 (2)

Lab affiliation

School of Biosciences, University of Sheffield (3)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine (2)
Department of Molecular Biology and Biotechnology, The University of Sheffield, UK. (2)
Department of Molecular Biology and Biotechnology, University of Sheffield, UK (2)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
1. Cancer Signalling Research Group, School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, Callaghan, NSW, AUSTRALIA 2. Precision Medicine Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW, AUSTRALIA 3. Paediatric Program, Mark Hughes Foundation Centre for Brain Cancer Research, College of Health, Medicine, and Wellbeing, Callaghan, NSW, AUSTRALIA (1)
1School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, NSW, 2308, Australia 2 Precision Medicine Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW, 2305, Australia (1)
Anesthesiology & Perioperative Medicine Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 USA (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive Stanford, CA 94305-5175, USA (1)
Bernstein Professor Emeritus in Adult Psychiatry Department of Psychiatry and Behavioral Sciences University of Minnesota Medical School (1)
Beth Israel Deaconess Medical Center, Harvard Medical School, Broad Institute (1)
Boston University School of Medicine (1)
Brigham Women's Hospital, Harvard medical school (1)
Calico Life Sciences (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, 6 Novohradská 237, Třeboň, 379 81, Czech Republic (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, Třeboň,CZ. (1)
Committee on Cancer Biology, The University of Chicago, Chicago, IL, USA Department of Pathology, The University of Chicago, Chicago, IL, USA Department of Pediatrics, The University of Chicago, Chicago, IL, USA The University of Chicago Medicine Comprehensive Cancer Center, University of Chicago, Chicago, IL, USA (1)
Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA (1)
Cornell University (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
Department of Anesthesiology & Perioperative Medicine, Oregon Health & Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (1)

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S. aureus gene expression following growth in media containing oleic acid

S. aureus response to exogenous fatty acid (oleic acid) Gene expression profiles were generated by microarray analysis of S. aureus cells grown in media without or with oleic aicd Comparison of expression profiles after growth of S. aureus in exogenous fatty acid S. aureus was grown in media with an...

ORGANISM(S): Staphylococcus aureus subsp. aureus RN4220

2012-12-21 | E-GEOD-36231 | biostudies-arrayexpress

Transcription profiling of genetically cerebral malaria-resistant (CM-R) and cerebral malaria-susceptible (CM-S) mouse strains

Gene expression patterns were investigated in well-defined genetically cerebral malaria-resistant (CM-R) and cerebral malaria-susceptible (CM-S) mouse strains. cDNA microarrays were used to search for differentially expressed genes in mouse brain. Four mouse strains, known to differ in susceptibilit...

ORGANISM(S): Mus musculus

2005-06-30 | E-MEXP-370 | biostudies-arrayexpress

NHLBI TOPMed: The Jackson Heart Study

Since there is a greater prevalence of cardiovascular disease among African Americans, the purpose of the Jackson Heart Study (JHS) is to explore the reasons for this disparity and to uncover new approaches to reduce it. The JHS is a large, community-based, observational study whose 5306 particip...

phs000964 | dbGaP

THE FAM53C/DYRK1A AXIS REGULATES THE G1/S TRANSITION OF THE CELL CYCLE

A growing number of small molecules are becoming available to target the cell cycle machinery for the treatment of cancer and other human diseases. Consequently, a greater understanding of the factors regulating cell cycle progression becomes essential to help enhance to response of patients to thes...

ORGANISM(S): Homo sapiens (Human)

2026-04-23 | PXD055829 | Pride

G1/s transition Cell cycle

S. aureus gene expression of WT (USA300) vs fakAKO

S. aureus response to fakA deletion Gene expression profiles were generated by microarray analysis of S. aureus WT (USA300) or fakAKO S. aureus was grown in LB to an OD600nm of 0.45, and RNA was extracted to look at the gobal gene expression.

ORGANISM(S): Staphylococcus aureus

2014-08-01 | E-GEOD-57340 | biostudies-arrayexpress

TEAL-seq (Targeted Expression Analysis Sequencing) of S. aureus and S. epidermidis in TSB and skin-relevent conditions

PRJNA1171333 | ENA

Clinical correlates and heritability of QT interval duration in blacks: the Jackson Heart Study.

Not available

S-EPMC2772163 | biostudies-literature

Concordance between self-reported and actigraphy-assessed sleep duration among African-American adults: findings from the Jackson Heart Sleep Study.

Not available

S-EPMC7066489 | biostudies-literature

Allostatic load in the association of depressive symptoms with incident coronary heart disease: The Jackson Heart Study.

Not available