Jain M M - OmicsDI

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Unknown (4237)
Proteomics (123)
Transcriptomics (85)
Genomics (25)
Metabolomics (10)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (107)
Mus musculus (59)
Drosophila melanogaster (11)
Arabidopsis thaliana (9)
Saccharomyces cerevisiae (7)
Cicer arietinum (6)
Gossypium hirsutum (4)
Caenorhabditis elegans (4)
Oryza sativa (4)
Rattus norvegicus (3)
Bos taurus (3)
Escherichia coli (3)
Chlamydomonas reinhardtii (2)
Staphylococcus aureus (2)
Plasmodium falciparum 3D7 (2)
Solanum melongena (1)
Oryza coarctata (1)
Cavia porcellus (1)
Ciona intestinalis (1)
Mus musculus x Mus spretus (1)
Catharanthus roseus (1)
Sorghum bicolor (1)
Oryza sativa Indica Group (1)
Nicotiana tabacum (1)
31646 (1)
Alphavirus (1)
Arachis hypogaea (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Bacteria (1)
Brassica napus (1)

Organisms

Cavia porcellus (1)

Repository

pride (112)
biostudies-arrayexpress (105)
MassIVE (8)
MetaboLights (8)
EGA (5)
GNPS (2)
ENA (2)
dbGaP (1)
GPMDB (1)
iProX (1)

Tissue

Cell culture (16)
Permanent cell line cell (8)
Brain (6)
Epithelial cell (6)
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Adrenal gland (1)
Aorta smooth muscle cell line (1)
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Bile (1)

Disease

Breast cancer (4)
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Plasmodium falciparum malaria (2)
Stomach cancer (2)
Small cell lung carcinoma (1)
Primary nodular malignant melanoma (1)
Not Available (1)
Acinetobacter infectious disease (1)
Alzheimer's disease 4 (1)
Amyotrophic lateral sclerosis (1)
Beta thalassemia (1)
Bladder urachal urothelial carcinoma (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Disease free (1)
Embryonal rhabdomyosarcoma (1)
FTDALS1 (1)
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Head and neck cancer (1)
Head and neck squamous cell carcinoma (1)
Inherited metabolic disorder (1)
Lung cancer (1)
Lung carcinoma (1)
Lymphoma (1)
Malignant mesothelioma (1)

Technology Type

Mass Spectrometry (112)
Shotgun proteomics (56)
Bottom-up proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (12)
Data-dependent acquisition (9)
Mass spectrometry (7)
Gel-based experiment (7)
Top-down proteomics (6)
Data-independent acquisition (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (3)
SRM/MRM (2)
Codelink Human Whole Genome Bioarray (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
HDMSE (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
6550 iFunnel Q-TOF LC/MS (4)
Illumina HiSeq 4000 (3)
LTQ Orbitrap Elite (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina HiScanSQ (1)
Illumina NovaSeq X (1)
Illumina HiSeq X (1)
NextSeq 2000 (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
Q-Exactive HF (1)
TimsTOF Pro 2 (1)
Velos Plus (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2021 (22)
2024 (20)
2026 (19)
2025 (17)
2014 (17)
2016 (16)
2023 (14)
2019 (14)
2015 (14)
2020 (13)
2012 (13)
2010 (10)
2013 (9)
2022 (9)
2011 (7)
2018 (7)
2009 (3)
2008 (3)
2005 (3)
2017 (3)
2006 (2)
2007 (1)

CHEBI ID

CHEBI:15318 (4)
CHEBI:15891 (4)
CHEBI:16235 (4)
CHEBI:16264 (4)
CHEBI:16704 (4)
CHEBI:16737 (4)
CHEBI:16811 (4)
CHEBI:18186 (4)
CHEBI:18211 (4)
CHEBI:18257 (4)
CHEBI:22653 (4)
CHEBI:22660 (4)
CHEBI:25017 (4)
CHEBI:27897 (4)
CHEBI:28044 (4)
CHEBI:28300 (4)
CHEBI:28867 (4)
CHEBI:30769 (4)
CHEBI:6650 (4)
CHEBI:15354 (3)
CHEBI:15355 (3)
CHEBI:15727 (3)
CHEBI:15760 (3)
CHEBI:15978 (3)
CHEBI:16027 (3)
CHEBI:16108 (3)
CHEBI:16449 (3)
CHEBI:16680 (3)
CHEBI:16708 (3)
CHEBI:16750 (3)

Metabolite Name

Ascorbic acid (3)
Asparagine (3)
Creatinine (3)
Glutamine (3)
Methionine (3)
Ornithine (3)
Phenylalanine (3)
Proline (3)
Threonine (3)
Tryptophan (3)
Tyrosine (3)
Xanthine (3)
Acetylcholine (2)
Alanine (2)
Arginine (2)
Aspartate (2)
Butyryl-carnitine (2)
Citrulline (2)
Decanoic acid (2)
Ethanolamine phosphate (2)
Glutamate (2)
Glycine (2)
Guanine (2)
Hydroxyproline (2)
Lactate (2)
Leucine (2)
Lysine (2)
Malate (2)
Mevalonate (2)
Octanoic acid (2)

First Public Date

2024 (1)
2014 (1)

Study type

Transcription profiling by array (30)
RNA-seq of coding RNA (17)
ChIP-seq (15)
Comparative genomic hybridization by array (13)
RNA-seq of coding RNA from single cells (6)
RNA-seq of non coding RNA (4)
ChIP-chip by array (3)
Transcription profiling by RT-PCR (3)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (2)
CUT&Tag (1)
Cell line - Single-cell sequencing (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

2022 (531)
2025 (529)
2021 (515)
2024 (477)
2023 (457)
2020 (323)
2019 (270)
2018 (225)
2017 (177)
2016 (172)
2015 (154)
2014 (109)
2012 (86)
2026 (83)
2013 (80)
2011 (55)
2010 (39)
2009 (20)
2008 (17)
2006 (9)
2005 (5)
2007 (4)
2004 (3)
2003 (2)

Lab affiliation

Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (4)
Baylor College of Medicine (3)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Department of Pathology, Dalhousie University (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Institute of Bioinformatics, Bangalore, Karnataka, India (2)
Jawaharlal Nehru University, New Delhi, India (2)
Leukemia Department, MD Anderson Cancer Center, Houston, TX 77030 (2)
Professor Laboratory Medicine and Pathology Mayo Clinic, Rochester, MN, USA (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
University of Toronto (2)
1 Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts, U.S.A. 2 Barnett Institute of Chemical and Biological Analysis, Northeastern University, Boston, Massachusetts, U.S.A (1)
1-Department of Biochemistry and Molecular Medicine; Université de Montréal; C.P. 6128, Succ. Centre-Ville, Montréal, Québec, H3C 3J7; Canada. 2-Institut de Recherches Cliniques de Montréal, 110 Avenue des Pins Ouest, Montréal, Québec, H2W 1R7; Canada. 3-Faculty of Medicine, Division of Experimental Medicine, McGill University, Montréal, Québec, H3A 1A3; Canada. (1)
Akhilesh Pandey, M.D, Ph.D. 527 Miller Research Building 733 N. Broadway Baltimore, MD 21205 (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Angiogenesis and Tumor Microenvironment Lab The Swiss Institute for Experimental Cancer Research (ISREC) School of Life Sciences Ecole Polytechnique Fédérale de Lausanne (EPFL) Swiss Federal Institute of Technology, Lausanne, Switzerland (1)
Associate Professor and Head-Proteomics Research, School of Biotechnology, Amrita Vishwa Vidyapeetham, Amritapuri Campus, Clappana PO., Kollam-690525, Kerala, India, Phone- 0476 2803119, 2803110 (lab head) (1)
Associate Professor of Chemistry Dow Early Career Professor of Chemistry Associate Director of the Program in Chemical Biology Co-Director the Chemical Biology Interface Training Program University of Michigan 930 N University Ann Arbor, MI 48109 (1)
Baylor College of Medicine Houston, Texas (1)
Baylor College of Medicine, Houston, Texas (1)
Baylor College of Medicine, Houston, Texas, 77030 (1)
Baylor College of Medicine, Houston, Texas, USA (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, The Netherlands; Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht (1)
Breast Center, Baylor College of Medicine, Houston, TX US (1)
Broad Institute, Dana Farber Cancer Institute (1)
CSIR-Institute of Genomics and Integrative Biology, New Delhi (1)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (1)

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Array-based comparative genomic hybridization analysis of primary neuroblastoma

We conducted microarray-based comparative genomic hybridization (array-CGH) with a DNA chip carrying 2,464 BAC clones to examine genomic aberrations of 236 neuroblastomas (112 sporadic and 124 mass screening-detected). In paralell, gene-expression profiling was also performed by using in-house cDNA ...

ORGANISM(S): Homo sapiens

2007-08-06 | E-GEOD-5784 | biostudies-arrayexpress

Undifferentiated spermatogonia regulate Cyp26b1 expression through NOTCH signaling and drive germ cell differentiation.

Not available

S-EPMC6593872 | biostudies-literature

Mouse Interferon M-NM-1, M-NM-2 RTM-BM-2 Profiler PCR

Infection of mouse bone marrow Flts3L-derived dendritic cells (FL-DCs) with chimeric human T cell leukemia virus type 1 (HTLV-1) results in the upregulation as well as selective downregulation of various interferon-stimulated genes. Mouse bone marrow Flt3L-derived dendritic cells were infected with ...

ORGANISM(S): Mus musculus

2010-10-28 | E-GEOD-24957 | biostudies-arrayexpress

A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages.

Not available

S-EPMC6962769 | biostudies-literature

Single-nucleotide Resolution Epitranscriptomic Profiling Uncovers Dynamic m <sup>6</sup> A Regulation in Bovine Preimplantation Development.

Not available

S-EPMC12265534 | biostudies-literature

Interaction between polyketide synthase and transporter suggests coupled synthesis and export of virulence lipid in M. tuberculosis.

Not available

S-EPMC1238737 | biostudies-literature

Intracellular calcium dynamics of lymphatic endothelial and muscle cells co-cultured in a Lymphangion-Chip under pulsatile flow.