Jeffrey M M - OmicsDI

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Unknown (794)
Transcriptomics (424)
Genomics (167)
Proteomics (126)
Metabolomics (17)
Models (12)
Genomic (11)
Multiomics (4)
Other (2)

Organisms

Homo sapiens (377)
Mus musculus (137)
Saccharomyces cerevisiae (20)
Rattus norvegicus (16)
Escherichia coli (16)
Bacteroides thetaiotaomicron (7)
Macaca mulatta (6)
synthetic construct (6)
Schizosaccharomyces pombe (5)
Arabidopsis thaliana (5)
Mycobacterium tuberculosis (4)
Canis lupus familiaris (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Bifidobacterium longum (2)
Gossypium hirsutum (2)
Chlamydomonas reinhardtii (2)
Citrus sinensis (2)
Zea mays (2)
Salmo salar (2)
Solanum tuberosum (2)
Ovis aries (2)
Caenorhabditis elegans (2)
Drosophila melanogaster (2)
Chordata (1)
Rattus (1)
Coccidioides posadasii (1)
Caldicellulosiruptor kronotskyensis (1)
Neurospora discreta (1)
Neurospora tetrasperma (1)
Fusarium verticillioides (1)

Organisms

Mus musculus (3)
Brucella (1)
mine drainage metagenome (1)
Bacteroides thetaiotaomicron (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (447)
EGA (137)
pride (56)
MassIVE (52)
MetaboLights (12)
BioModels (11)
dbGaP (11)
PanoramaPublic (7)
ENA (7)
GNPS (5)
jPOST (4)
PAXDB (4)
geo (2)
GPMDB (2)
PeptideAtlas (2)
FAIRDOMHub (1)
iProX (1)

Tissue

Cell culture (7)
Blood (5)
Epithelial cell (4)
Liver (4)
Brain (3)
Hepatocyte (3)
Plant cell (3)
T cell (3)
Blood cell (2)
Blood plasma (2)
Embryonic stem cell (2)
Epithelial cell of lung (2)
Neuron (2)
Others (1)
B cell (1)
Bone marrow (1)
Breast (1)
Colon (1)
Erythrocyte (1)
HeLa cell (1)
Hypocotyl (1)
Hypopharyngeal squamous cell carcinoma cell line (1)
Kidney (1)
Leaf (1)
Leukocyte (1)
Lung (1)
Lung epithelial cell (1)
Lung epithelial cell differentiation (1)
Macrophage (1)
Megakaryocyte (1)

Disease

Leukemia (3)
Lymphoma (3)
Normal (3)
Wilms tumour (2)
Not Available (2)
Amyotrophic lateral sclerosis type 1 (2)
Breast cancer (2)
Human immunodeficiency virus infectious disease (2)
Influenza (2)
Alzheimer's disease (1)
Heart disease (1)
Huntington's disease (1)
Osteoarthritis (1)
Osteoporosis (1)
Paget's disease of bone (1)
Parkinson's disease (1)
Mild cystic fibrosis, pulmonary disease (1)
LPS-induced acute lung injury (1)
Bone marrow (1)
COVID-19 (1)
Chronic myeloid leukemia (1)
Colon cancer (1)
Diabetes mellitus (1)
Disease free (1)
Hepatocellular carcinoma (1)
Macular holes (1)
Neuroblastoma (1)
Proliferative diabetic retinopathy (1)
Skin melanoma (1)
Squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (26)
Bottom-up proteomics (17)
Mass spectrometry (11)
Illumina 15K (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (4)
Top-down proteomics (3)
Illumina HiSeq 2000 (2)
All-ion fragmentation (2)
Data-independent acquisition (2)
Gel-based experiment (2)
AB 5500 Genetic Analyzer (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix 6.0 (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina (various), Illumina (Various) (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HumanHap 550 (1)
Illumina MiSeq (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
Mass spectrometry assay (1)
MSE (1)
Olink affinity proteomics (1)

Instrument Platform

Q Exactive (9)
Orbitrap Fusion Lumos (9)
Agilent Technologies G2565CA microarray scanner (6)
LTQ Orbitrap Velos (6)
Orbitrap Fusion (6)
Q Exactive Plus (5)
LTQ (5)
LTQ Orbitrap Elite (4)
TSQ Quantiva (4)
LTQ FT (3)
LTQ Orbitrap (3)
Orbitrap Exploris 480 (3)
IScan (2)
Axon GenePix 4000B scanning hardware (2)
Illumina NovaSeq 6000 (2)
Instrument (2)
Orbitrap Eclipse (2)
Q Exactive HF (2)
Affymetrix GeneChip Scanner (1)
Infors-HT Labfors chemostat (1)
NanoDrop (1)
Bellco roll-in incubator (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
ITQ 1100 (1)
MaXis (1)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (1)
Thermo Fisher Scientific (MA, USA) Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 µm particle size (1)

Publication Date

2010 (60)
2015 (53)
2014 (52)
2013 (48)
2011 (48)
2008 (39)
2012 (36)
2016 (33)
2007 (31)
2009 (21)
2024 (20)
2019 (19)
2023 (18)
2005 (17)
2020 (16)
2022 (15)
2021 (14)
2006 (12)
2026 (12)
2025 (11)
2017 (10)
2018 (7)
2004 (3)
2002 (3)

UNIPROT ID/AC

O54910 (1)
O88351 (1)
O88522 (1)
P17612 (1)
P25799 (1)
P54750 (1)
P63092 (1)
Q08828 (1)
Q5T5Y4 (1)
Q60680 (1)
Q60778 (1)
Q9Z1E3 (1)
14331_ORYSJ (1)
14331_SOLLC (1)
14334_ORYSJ (1)
14335_SOLLC (1)
14337_ORYSJ (1)
14337_SOLLC (1)
14338_SOLLC (1)
1433B_SOYBN (1)
2A5K_ORYSJ (1)
2ABA_ORYSJ (1)
3055.EDP00778 (1)
3055.EDP02272 (1)
3055.EDP03640 (1)
3055.EDP03813 (1)
3055.EDP04366 (1)
3847.GLYMA06G11530.1 (1)
3847.GLYMA07G36560.3 (1)
3847.GLYMA08G02375.1 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:16027 (5)
CHEBI:17268 (5)
CHEBI:18012 (5)
CHEBI:30769 (5)
CHEBI:15741 (4)
CHEBI:15891 (4)
CHEBI:16450 (4)
CHEBI:16668 (4)
CHEBI:17126 (4)
CHEBI:17992 (4)
CHEBI:18237 (4)
CHEBI:26078 (4)
CHEBI:26984 (4)
CHEBI:28044 (4)
CHEBI:30746 (4)
CHEBI:33508 (4)
CHEBI:6650 (4)
CHEBI:10072 (3)
CHEBI:14336 (3)
CHEBI:15354 (3)
CHEBI:15356 (3)
CHEBI:15728 (3)
CHEBI:15756 (3)
CHEBI:15999 (3)
CHEBI:144829 (2)
CHEBI:15422 (1)
CHEBI:15996 (1)
CHEBI:17489 (1)
CHEBI:17552 (1)

Metabolite Name

Fructose (3)
Glycine (3)
Myo-inositol (3)
Sucrose (3)
Uracil (3)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (2)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (2)
1-linoleoyl-GPE (18:2)* (2)
1-methylhistidine (2)
1-palmitoyl-GPC (16:0) (2)
1-palmitoyl-GPE (16:0) (2)
12,13-DiHOME (2)
2'-deoxycytidine (2)
2'-deoxyuridine (2)
2-aminoadipate (2)
2-aminoheptanoate (2)
2-hydroxy-3-methylvalerate (2)
2-hydroxydecanoate (2)
2-hydroxyglutarate (2)
2-hydroxypalmitate (2)
2-hydroxyphenylacetate (2)
2-piperidinone (2)
3-hydroxy-3-methylglutarate (2)
3-hydroxylaurate (2)
3-hydroxysebacate (2)
3-hydroxysuberate (2)
3-indoxyl sulfate (2)
3-methyl-2-oxobutyrate (2)
3-methyl-2-oxovalerate (2)
3-methylhistidine (2)

First Public Date

2014 (5)
2023 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (10)

Lab affiliation

Icahn School of Medicine at Mount Sinai (5)
Northeastern University (3)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 (2)
Jacqui Wood Cancer Centre, Medical Research Institute, Ninewells Hospital and Medical School, University of Dundee, James Arrott Drive, Dundee DD1 9SY, Scotland (2)
University of California San Francisco (2)
University of Virginia (2)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, National Center for Nanoscience and Technology, Beijing, China (1)
Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre Cambridge Biomedical Campus, University of Cambridge, Cambridge, CB2 0AW, UK. (1)
Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Department of Medicine, University of Cambridge, Cambridge, CB2 0AW, UK (1)
Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, UK (1)
Chemistry Department, University of Minnesota (1)
Department of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA. (1)
Department of Biochemistry, University of Colorado, Boulder, CO 80309, USA Renewable and Sustainable Energy Institute, University of Colorado, Boulder, CO 80309, USA National Renewable Energy Laboratory, Golden, CO 80401, USA (1)
Department of Biological Sciences, University of Arkansas, USA (1)
Department of Chemistry and Biochemistry, California State University Fullerton (1)
Department of Chemistry, University of Virginia (1)
Department of Medicine, University of California San Francisco, USA (1)
Department of Microbiology Icahn School of Medicine Mount Sinai (1)
Department of Microbiology Icahn School of Medicine at Mount Sinai (1)
Department of Microbiology at NYU Grossman School of Medicine. (1)
Department of Microbiology; Icahn School of Medicine at Mount Sinai; New York, NY, 10029; USA (1)
Department of Nuclear Medicine and Radiobiology Faculty of Medicine and Health Sciences Université de Sherbrooke Sherbrooke, Quebec, Canada (1)
Department of Ophthalmology, Penn State College of Medicine (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK (1)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK. (1)
ETH Zurich (1)
Gladstone Institutes (1)

IsPrivate

False (11)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (2)

Classification

bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (266)
RNA-seq of coding RNA (47)
Unknown experiment type (36)
Comparative genomic hybridization by array (36)
ChIP-seq (20)
Methylation profiling by array (12)
Genotyping by array (9)
Other (5)
ChIP-chip by tiling array (4)
RNA-seq of non coding RNA (4)
Methylation profiling by high throughput sequencing (3)
RNAi profiling by array (1)
ATAC-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (106)
2021 (97)
2025 (89)
2023 (89)
2024 (74)
2010 (68)
2013 (67)
2015 (66)
2016 (66)
2014 (63)
2020 (61)
2011 (58)
2018 (51)
2019 (50)
2012 (46)
2008 (40)
2017 (39)
2007 (32)
2009 (25)
2026 (17)
2005 (16)
2006 (14)
2002 (3)
2004 (2)
2001 (1)
1999 (1)

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Widespread over-expression of the X chromosome in sterile F1 hybrid mice

We used a reciprocal cross of Mus musculus and M. domesticus in which F1 males are sterile in one direction and fertile in the other direction, in order to associate expression differences with sterility. Four different crosses were performed. A cross between two strains within each mouse species (M...

ORGANISM(S): Mus musculus musculus x M. m. domesticus

2010-10-05 | E-GEOD-17684 | biostudies-arrayexpress

Meiotic recombination cold spots in chromosomal cohesion sites [ChIP-Seq]

Meiotic chromosome architecture called M-bM-^@M-^\axis-loop structuresM-bM-^@M-^] and histone modifications have been demonstrated to regulate the Spo11-dependent formation of DNA double-strand breaks (DSBs) that trigger meiotic recombination. Using genome-wide chromatin immunoprecipitation (ChIP) a...

ORGANISM(S): Saccharomyces cerevisiae

2014-03-31 | E-GEOD-52862 | biostudies-arrayexpress

Phase I Study of LY2606368, a Checkpoint Kinase 1 Inhibitor, in Patients With Advanced Cancer.

Not available

S-EPMC5321045 | biostudies-literature

Different immunological patterns of Down syndrome patients with and without recurrent infections.

Not available

S-EPMC11662752 | biostudies-literature

After demyelination in the adult CNS, oligodendrocyte precursor cells revert to an immature mRNA profile and express immune cues favoring their migration

In multiple sclerosis (MS) and experimental models of demyelination, myelin repair is mostly achieved by oligodendrocyte precursor cells (OPCs). To gain insight into the biological specificity of these adult precursors, in the perspective to better understand why remyelination often fails in MS, we ...

ORGANISM(S): Mus musculus

2014-11-06 | E-GEOD-48872 | biostudies-arrayexpress

Phase I pharmacokinetic and pharmacodynamic study of the multikinase inhibitor sorafenib in combination with clofarabine and cytarabine in pediatric relapsed/refractory leukemia.

Not available

S-EPMC3158600 | biostudies-literature

Plasmid-Mediated Co-Occurrence of mcr-1.1 in Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli Isolated From the Indigenous Seminomadic Community in Malaysia.

Not available

S-EPMC12017022 | biostudies-literature

Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome.

Not available

S-EPMC8963317 | biostudies-literature

2021 Jeffrey M. Hoeg Award Lecture: Defining the Role of Efferocytosis in Cardiovascular Disease: A Focus on the CD47 (Cluster of Differentiation 47) Axis.