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ProteomicsAccurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome
We applied SD-SILAC to determine absolute acetylation stoichiometry in exponentially-growing and stationary-phase wild type and sirtuin deacetylase CobB-deficient E. coli. We further assayed stoichiometry in phophotransacetylase (pta) and acetate kinase (ackA) mutant strains in the presence and abse...
ORGANISM(S): Escherichia coli 
2017-03-07 | PXD005757 | Pride
E. coli Sirtuin Acetylation Stoichiometry Cobb 
TranscriptomicsExpression profile of E. coli in response to exogenous addition of isopentenol
Exogenous isopentenol was added to a culture of E. coli and the RNA expression response was measured using Nimblegen arrays. Genes highly upregulated were then subsequently overexpressed to improve the tolerance to isopentenol toxicity. In addition a subset of genes that improved the tolerance wer...
ORGANISM(S): Escherichia coli 
2013-12-10 | E-GEOD-53138 | biostudies-arrayexpress
UnknownDifferences Between APOE Carriers and Non-APOE Carriers on Neurocognitive Tests: Jensen Effects?
Not available
S-EPMC10852421 | biostudies-literature
GenomicsDNA-seq of differentially induced promoter regions in E. coli UTI89 strain grown in either J82 bladder epithelial cells, urine, DMEM or LB medium.
The method DFI-seq was developed to enable identification of differentially expressed genes in uropathogenic E. coli strain UTI89 during growth in human urine and in bladder epithelial cells. By utilising this new method, the aim was to identify novel virulence genes in UTI89. DFI-seq is a combinati...
ORGANISM(S): Escherichia coli UTI89 
2017-05-01 | E-MTAB-5657 | biostudies-arrayexpress
UnknownConcomitant sensitization to legumin, Fag e 2 and Fag e 5 predicts buckwheat allergy.
Not available
S-EPMC5814722 | biostudies-literature
ProteomicsLactiplantibacillus plantarum as a novel platform for production and purification of integral membrane proteins using RseP as the benchmark
Identification of gel bands from purified fractions from expression of RseP in E.coli and Lactiplantibacillus plantarum.
ORGANISM(S): Lactiplantibacillus Plantarum Escherichia Coli (ncbitaxon:562) 
2023-06-02 | MSV000092087 | MassIVE
UnknownHepatitis E virus variant in farmed mink, Denmark.
Not available
S-EPMC3840851 | biostudies-literature
UnknownIncreased acrolein-DNA adducts in buccal brushings of e-cigarette users.
Not available
S-EPMC9167028 | biostudies-literature
TranscriptomicsTranscription profiling of Bos taurus mammary gland infected with E. coli or S. aureus to investigate response to pathogen invasion and identify general and pathogen-specific transcriptional profiles
Investigation of the bovine mammary gland response to Escherichia coli and Staphylococcus aureus infection. The aims of the study were to examine the dynamics of the mammary gland response to pathogen invasion and identify general and pathogen-specific transcriptional profiles. Individual udder qu...
ORGANISM(S): Bos taurus 
2011-05-01 | E-TABM-704 | biostudies-arrayexpress
ProteomicsProteomes of uropathogenic Escherichia coli growing in human urine and in J82 urinary bladder cell.
Uropathogenic Escherichia coli (UPEC) are the most common cause of urinary tract infection (UTI). UPEC normally reside in the intestine, and during establishment of UTI, it undergoes metabolic adaptations, first to urine and then upon tissue invasion to the bladder cell interior. In order to underst...
ORGANISM(S): Escherichia coli 
2022-06-09 | PXD032049 | Pride
Metabolism Proteome Upec Urinary tract infections 
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