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TranscriptomicsTranscriptional analyses of the ectomycorrhizal (ECM) fungus Paxillus involutus during growth on various lignocellulose soil substrates
In this study, examinations were performed on how the ECM fungus Paxillus involutus degrade complex, plant and litter material by using elemental analyses, FTIR spectroscopy, pyrolysis-GC/MS, and synchronous fluorescence spectroscopy together with microarray analyses screening 12,214 gene models, de...
ORGANISM(S): Paxillus involutus 
2012-02-01 | E-GEOD-34402 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of parasitic fungus Monacrosporium haptotylum during infection of nematode C. elegans
This investigation was designed to follow the parasitic fungus Monacrosporium haptotylum during infection of the nematode Caenorhabditis elegans. M. haptotylum traps nematodes using a spherical structure called knob, which develops on the apex of a hyphal branch. The advantage of using this species ...
ORGANISM(S): Caenorhabditis elegans 
2008-06-01 | E-MEXP-1247 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of traps and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum
A microarray analysis was conducted to investigate transcriptional differences between traps and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum. Our goal was to identify genes that show differential regulation in the two different cell types; 1) traps (knobs) and 2) vegetati...
ORGANISM(S): Monacrosporium haptotylum 
2005-01-23 | E-MEXP-250 | biostudies-arrayexpress
TranscriptomicsCarbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus
Abstract: A large part of the nitrogen in forest soils is found in recalcitrant organic matter-protein complexes. Ectomycorrhizal fungi are thought to have a key role in the decomposition and mobilization of nitrogen from such complexes. The knowledge on the functional mechanisms of these processes,...
ORGANISM(S): Paxillus involutus ATCC 200175 
2013-04-30 | E-GEOD-45303 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of different tissues of the ECM interaction between Betula pendula and Paxillus involutus grown in peat microcosms containing (NH4)2SO4 nutrient patches
A microarray analysis was conducted to analyze gene expression patterns in different tissues of the ECM interaction between Betula pendula and Paxillus involutus grown in peat microcosms containing (NH4)2SO4 nutrient patches. Expression profiles for mycorrhizal root tips (TIP), rhizomorphs (CORD) an...
ORGANISM(S): Paxillus involutus 
2005-08-01 | E-MEXP-275 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of 5 strains of Paxillus filamentosus and 1 strain of Paxillus involutus
Variations in gene content and sequence that could be associated with symbiotic adaptations of the ectomycorrhizal fungus Paxillus involutus were investigated by analyses of strains showing various abilities to form mycorrhiza. Five strains of Paxillus involutus (ATCC 200175, Maj; Nau, Pi01SE, and P...
ORGANISM(S): Paxillus filamentosus 
2006-01-01 | E-MEXP-437 | biostudies-arrayexpress
TranscriptomicsGene expression changes in Paxillus involutus- Betula pendula ectomycorrhizal roots compared to Paxillus involutus mycelium patches
Illumina HiSeq technology was used to generate mRNA profiles from Paxillus involutus ectomycorrhizal roots compared to mycelium patches . Mycorrhizal roots were harvested after 4 weeks, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Paxillus involutus (http://ge...
ORGANISM(S): Paxillus involutus 
2015-02-06 | E-GEOD-63924 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of zebra finch and common whitethroat samples using a Affymetrix custom array designed for the zebra finch
We have conducted a Cross-Species Microarray analysis by hybridizing genomic DNA from the common whitethroat (Sylivia communis) on a newly developed Affymetrix costum array designed for the zebra finch (Taeniopygia guttata), the Lund-zf array. We have also quality tested the Lund-zf array by hybridi...
ORGANISM(S): Sylvia communis 
2007-09-30 | E-MEXP-1181 | biostudies-arrayexpress
Genomicsena-DATASET-ABIS-23-01-2015-20:54:00:939-774 - samples
Description not provided
EGAD00001001221 | EGA
GenomicsABIS 1 MeDIP-seq
We investigated changes in whole genome DNA-methylation in a group of 48 healthy five-year-old children differentiated by their hair cortisol levels. By combining this novel biomarker for chronic stress with methylated DNA immunoprecipitation sequencing (MeDIP-seq), we found that high cortisol were...
EGAS00001001099 | EGA
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