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GenomicHIV-1 Host Genetics Among Injection Drug Users

The overarching goal of this project is to identify and characterize genetic determinants of HIV 1 susceptibility and resistance in samples of African American (AA) and European American (EA) injection drug users (IDUs) by conducting (1) a case/control genome-wide association (GWA) study of HIV 1...

phs000454 | dbGaP
UnknownIntensive chemotherapy and immunotherapy in patients with newly diagnosed primary CNS lymphoma: CALGB 50202 (Alliance 50202).
Not available
S-EPMC3753699 | biostudies-literature
TranscriptomicsDrosophila adults 0.5% O2 6hr
Identify genes with increased transcript abundance after low oxygen stress in Drosophila adults. There are 6 Oregon-R experiments comparing low oxygen exposed to normal oxygen. Samples 1-4 have hypoxic RNA labeled with cy5, and samples 5&6 are dye-swaps with the hypoxic RNA labeled with cy3. Sampl...
ORGANISM(S): Drosophila melanogaster 
2010-06-30 | E-GEOD-3482 | biostudies-arrayexpress
TranscriptomicsGenetic homogeneity among strains of Clostridium botulinum type A1 with a unique toxin gene cluster organization
Comparative genomic hybridizations were performed to compare bont/A1 strains with an A2-like toxin gene cluster organization to the genome sequenced strain, C. botulinum ATCC 3502. Keywords: comparative genomic hybridization For each hybridization, the reference strain (C. botulinum ATCC 3502) was...
ORGANISM(S): Clostridium botulinum 
2010-05-26 | E-GEOD-10223 | biostudies-arrayexpress
TranscriptomicsGenome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
This series represents 52 tissues hybridized across 5 different chip patterns. Probes were placed at every exon-exon junction in each transcript. Keywords = junction alternate splicing oligonucleotide Keywords: parallel sample. This dataset is part of the TransQST collection.
ORGANISM(S): Homo sapiens 
2003-12-19 | E-GEOD-740 | biostudies-arrayexpress
TranscriptomicsQuiescent Fibroblasts Exhibit High Metabolic Activity
Many cells in mammals exist in the state of quiescence, which is characterized by reversible exit from the cell cycle. Quiescent cells are widely reported to exhibit reduced size, nucleotide synthesis, and metabolic activity. Much lower glycolytic rates have been reported in quiescent compared with ...
ORGANISM(S): Homo sapiens 
2012-11-30 | E-GEOD-42612 | biostudies-arrayexpress
UnknownImplementation strategies for integrating pre-exposure prophylaxis for HIV prevention and family planning services for adolescent girls and young women in Kenya: a qualitative study.
Not available
S-EPMC8969252 | biostudies-literature
TranscriptomicsGenomeTiling
Samples were purchased from Clontech as mRNA. Hybridization material was generated through a random-priming amplification procedure (RP-AMP) using primers with a random sequence at the 3' end and a fixed motif at the 5' end. shDNP256 (first strand synthesis): 5'- TAG ATG CTG TTG NNN NNN NNN -3' sh...
ORGANISM(S): Homo sapiens 
2004-03-03 | E-GEOD-1097 | biostudies-arrayexpress
GenomicsGenome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users

The overarching goal of this project is to identify and characterize genetic determinants of HIV 1 susceptibility and resistance in samples of African American (AA) and European American (EA) injection drug users (IDUs) by conducting (1) a case/control genome-wide association (GWA) study of HIV 1...

phs000454.v1.p1 | EGA
UnknownPhenoMeNal: processing and analysis of metabolomics data in the cloud.
Not available
S-EPMC6377398 | biostudies-literature
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