Johnson K K - OmicsDI

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Unknown (10994)
Transcriptomics (303)
Proteomics (185)
Genomics (97)
Metabolomics (83)
Genomic (1)
Methylation profiling (1)
Multiomics (1)

Organisms

Homo sapiens (189)
Mus musculus (65)
Arabidopsis thaliana (15)
Drosophila melanogaster (10)
Caenorhabditis elegans (6)
Saccharomyces cerevisiae (6)
Colinus virginianus (5)
Rattus norvegicus (5)
Danio rerio (5)
Candida albicans (4)
Caulobacter vibrioides (3)
Kluyveromyces lactis (2)
Oryza sativa (2)
Escherichia coli (2)
Vitis x champinii x Vitis riparia (1)
Sinorhizobium fredii (1)
Sphingomonas sp. LH128 (1)
Dehalococcoides (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Karenia brevis (1)
Synechococcus sp. CC9311 (1)
Oncorhynchus nerka (1)
Dehalobacter restrictus (1)
Taeniopygia guttata (1)
Macaca mulatta (1)
Equus caballus (1)
Fragilariopsis cylindrus (1)
Mus musculus domesticus (1)
Xenopus laevis (1)
Macaca fascicularis (1)

Organisms

Kluyveromyces lactis (4)
Homo sapiens (2)
Candida albicans (1)
insect metagenome (1)
gut metagenome (1)

Repository

biostudies-arrayexpress (347)
pride (122)
MetaboLights (80)
MassIVE (57)
EGA (36)
ENA (17)
PanoramaPublic (4)
GNPS (3)
geo (2)
dbGaP (1)
iProX (1)
PeptideAtlas (1)

Tissue

Cell culture (19)
Epithelial cell (11)
Brain (10)
B cell (4)
Cell suspension culture (4)
Fibroblast (4)
Blood cell (3)
Kidney (3)
Lung (3)
Macrophage (3)
Primary cell (3)
Skin (3)
T cell (3)
Blood serum (2)
Liver (2)
Melanocyte (2)
Permanent cell line cell (2)
Saliva (2)
Skeletal muscle (2)
Stem cell (2)
Others (1)
Adipose tissue (1)
Blood (1)
Blood plasma (1)
Breast (1)
Breast cancer cell (1)
Bronchoalveolar lavage (1)
HCT-116 cell (1)
HEK-293ET cell (1)
HeLa cell (1)

Disease

Melanoma (5)
Disease free (4)
Breast cancer (3)
COVID-19 (3)
Chronic lymphocytic leukemia (3)
Normal (2)
Alzheimer's disease (2)
Colon cancer (2)
Type 1 diabetes mellitus (2)
Colonic adenocarcinoma (1)
Infant SGA (1)
Breast carcinoma (1)
Adenocarcinoma (1)
Brain cancer (1)
Cancer (1)
Cystic fibrosis (1)
Dental caries (1)
Down syndrome (1)
Endometrial cancer (1)
Global developmental delay (1)
Hereditary spastic paraplegia 47 (1)
Hereditary spastic paraplegia 50 (1)
Hereditary spastic paraplegia 51 (1)
Hereditary spastic paraplegia 52 (1)
Hidradenitis suppurativa (1)
Human immunodeficiency virus infectious disease (1)
Inflammation (1)
Inflammatory bowel disease (1)
Influenza (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (122)
Shotgun proteomics (73)
Mass spectrometry (66)
Affinity purification coupled with mass spectrometry proteomics (21)
Bottom-up proteomics (20)
Data-dependent acquisition (11)
NMR spectroscopy (8)
Mass spectrometry assay (8)
Data-independent acquisition (3)
Gel-based experiment (3)
SWATH MS (3)
Top-down proteomics (3)
Illumina HiSeq 2000 (2)
Illumina Infinium 1.2M (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Unknown (1)
All-ion fragmentation (1)
HDMSE (1)
MSE (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
SomaScan affinity proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (13)
GC-MS (9)
Q Exactive (7)
Q Exactive Plus (6)
GC MS (6)
Orbitrap Exploris 480 (4)
TSQ Quantiva (4)
6510 Quadrupole Time-of-Flight LC/MS (3)
Illumina HiSeq 2000 (2)
LTQ Orbitrap XL (2)
Orbitrap Eclipse (2)
Orbitrap Fusion Lumos (2)
QExactive (2)
Illumina Genome Analyzer (1)
GenePix 4000B [Axon Instruments] (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
LTQ FT (1)
MaXis (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
Agilent 8890 GC-MS (1)
LTQ (Thermo Scientific instrument model) (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Velos (1)
Orbitrap Fusion (1)
Q Exactive HF (1)

Publication Date

2010 (80)
2014 (50)
2015 (46)
2012 (43)
2023 (36)
2011 (35)
2022 (35)
2020 (32)
2016 (31)
2024 (29)
2008 (28)
2013 (27)
2021 (26)
2017 (19)
2025 (19)
2018 (17)
2019 (15)
2009 (14)
2007 (12)
2026 (12)
2006 (4)
2005 (2)
2004 (1)
2003 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A075B6P5 (1)
A0A087WTX5 (1)
A0A087WWK8 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVK6 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A2IPI2 (1)
A2RU30 (1)
A5A3E0 (1)
A6NC98 (1)
A6NFI3 (1)
A6NHL2 (1)
A6NHR9 (1)
A6NJJ0 (1)
A6NNZ2 (1)
A8CG34 (1)
A8MPP1 (1)
A8MUU1 (1)
A9IYQ1 (1)
B2RPK0 (1)

CHEBI ID

CHEBI:28044 (23)
CHEBI:25017 (20)
CHEBI:16811 (19)
CHEBI:16335 (18)
CHEBI:27897 (18)
CHEBI:15354 (17)
CHEBI:17596 (17)
CHEBI:30769 (17)
CHEBI:18257 (16)
CHEBI:17750 (16)
CHEBI:18186 (16)
CHEBI:17568 (16)
CHEBI:15891 (15)
CHEBI:7916 (15)
CHEBI:26271 (15)
CHEBI:22660 (14)
CHEBI:18237 (14)
CHEBI:15428 (14)
CHEBI:27266 (14)
CHEBI:24898 (14)
CHEBI:18211 (14)
CHEBI:25094 (14)
CHEBI:16027 (14)
CHEBI:16708 (14)
CHEBI:16704 (14)
CHEBI:17895 (14)
CHEBI:16610 (13)
CHEBI:16865 (13)
CHEBI:16449 (13)
CHEBI:29016 (13)

Metabolite Name

Leucine (9)
Xanthine (9)
Adenosine (8)
L-Phenylalanine (8)
Succinate (7)
Taurine (7)
Isoleucine (7)
Phenylalanine (7)
Ornithine (7)
Leucine (6)
Proline (6)
Lysine (6)
Methionine (6)
Alanine (6)
Valine (6)
Choline (6)
Tyrosine (6)
Stearic acid (6)
Uric acid (6)
L-Tyrosine (6)
Xanthosine (5)
Glutamate (5)
Histidine (5)
Xanthine (5)
Inosine (5)
Glycine (5)
Glucose (5)
Guanosine (5)
Tryptophan (5)
Methionine (5)

First Public Date

2018 (6)
2014 (4)
2025 (2)
2013 (2)
2022 (1)
2021 (1)
2015 (1)

Classification

fungi (1)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (171)
RNA-seq of coding RNA (38)
Unknown experiment type (36)
ChIP-seq (31)
ChIP-chip by tiling array (23)
Methylation profiling by array (10)
Methylation profiling by high throughput sequencing (10)
Comparative genomic hybridization by array (8)
RNA-seq of non coding RNA (6)
Transcription profiling by tiling array (3)
Transcription profiling by SAGE (2)
Other (2)
DNA-seq (2)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
ATAC-seq (1)

Release Date

2022 (1217)
2025 (1161)
2024 (1064)
2023 (1053)
2021 (1039)
2020 (783)
2019 (670)
2018 (604)
2015 (527)
2017 (526)
2016 (476)
2014 (421)
2013 (320)
2012 (315)
2011 (246)
2010 (246)
2009 (160)
2026 (149)
2008 (131)
2007 (60)
2006 (52)
2005 (35)
2004 (20)
2002 (15)
2000 (13)
2001 (12)
2003 (11)
1998 (7)
1999 (6)
1997 (2)

Lab affiliation

Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Molecular Genetics, RPTU Kaiserslautern (3)
Pacific Northwest National Laboratory (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
UCSF (3)
Institute of Organic Chemistry and Biochemistry, Czech Academy of Science, Flemingovo n. 2, Prague, 166 10, Czech Republic (2)
University of California San Francisco (2)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Associate Professor, BMBB, University of Minnesota, Minneapolis, MN (1)
Associate Professor; Director of the Molecular and Applied Sciences Laboratory and Applied Physiology Laboratory (1)
Bacteriology Department, University of Wisconsin-Madison (1)
Baker Heart & Diabetes Institute (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Biophysical Chemistry Department of Clinical Chemistry, University Medical Center Goettingen (1)
Bioanalytical Mass Spectrometry Group,Max-Planck-Institute for Multidisciplinary Sciences,Goettingen, Germany (1)
Bristol-Myers Squibb, USA (1)
CDSS Bioanalytical Facility, Dept Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
CRUK Beatson Institute (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Center for Reproductive Evolution, Syracuse University (1)
Chair of Proteomics and Bioanalytics, TU Munich, Germany (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen, Denmark (1)
Department Chair • MCG - Department of Cellular Biology & Anatomy, Augusta University (1)
Department head (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biochemistry and Molecular and Structural Bilogy, Jozef Stefan Institute, Ljubljana, Slovenia (1)
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA (1)
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, USA (1)

Tags

pathogen:fungus (1)
pathogen (1)

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Co-IP of fHERV-K env protein and interactors

This project seeks to identify protein-protein interactions with human endogenous retrovirus K envelope protein. A flag-tagged HERV-K env construct (fHERV-K env) was expressed in HEK293 cells. An anti-flag MAb was immobilized on magnetic protein G beads was used to capture fHERV-K env and interactor...

ORGANISM(S): Homo sapiens (Human)

2020-07-06 | PXD019702 | Pride

Proteomic analysis of rhLF expressed in Komagataella phaffii

Prior to the introduction of novel food ingredients into the food supply, safety risk assessments are required, and numerous prediction models have been developed and validated to evaluate safety. The allergenic risk potential of Helaina recombinant human lactoferrin (rhLF, Effera™), produced in Kom...

ORGANISM(S): Komagataella phaffii

2024-10-17 | PXD053985 | Pride

Lactoferrin Allerg*

Accuracy and safety of percutaneous pedicle screw placement using the K-wireless minimally invasive spine percutaneous pedicle screw system in Japan: A randomized active controlled study.

Not available

S-EPMC9130105 | biostudies-literature

Proteomic studies on lactic acid bacteria: A review.

Not available

S-EPMC5986552 | biostudies-literature

A new highly selective fluorescent K+ sensor.

Not available

S-EPMC3223084 | biostudies-literature