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MetabolomicsSubcellular antibiotic visualization reveals a dynamic drug reservoir in infected macrophages
Tuberculosis, caused by the intracellular pathogen Mycobacterium tuberculosis, remains the world's deadliest infectious disease. Sterilizing chemotherapy requires at least 6 months of multidrug therapy. Difficulty visualizing the subcellular localization of antibiotics in infected host cells means t...
2020-12-07 | MTBLS959 | MetaboLights
ProteomicsRe-analysis of: ‘CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2’ (PXD000652) to demonstrate the ProteoAnnotator software for mapping identifications to Ensembl genomes
We have performed a re-analysis of PXD000652 - a human proteome CSF fluid sample, originally queried versus UniProt. We have used our ProteoAnnotator package to re-search the data against Ensembl Human build 76 to demonstrate the capability of the pipeline to perform genome mapping on a large scale.
ORGANISM(S): Homo sapiens (Human) 
2014-10-20 | PXD001390 | Pride
Proteoannotator 
ProteomicsRe-analysis of: ‘CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2’ (PXD000652) to demonstrate the ProteoAnnotator software for mapping identifications to Ensembl genomes
We have performed a re-analysis of PXD000652 - a human proteome CSF fluid sample, originally queried versus UniProt. We have used our ProteoAnnotator package to re-search the data against Ensembl Human build 76 to demonstrate the capability of the pipeline to perform genome mapping on a large scale.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000080193 | MassIVE
UnknownFeasibility of Quality Measures for the Diagnosis and Treatment of Carpal Tunnel Syndrome.
Not available
S-EPMC8132589 | biostudies-literature
ProteomicsA meta-analysis of phosphoproteomics datasets from Toxoplasma gondii
We performed a meta-analysis over 10 publicly available phosphoproteomics datasets available for Toxoplasma gondii, as part of the PTMeXchange project using standardised analysis pipelines. For the reference genome ME49, in total, 24360 phosphosites were identified at a minimum of 5% FLR in any data...
ORGANISM(S): Toxoplasma gondii 
2026-06-09 | PXD078724 | Pride
Phosphoproteomics Ptmexchange Reanalysis Public data Flr 
TranscriptomicsMyelodysplastic/myeloproliferative neoplasms
This SuperSeries is composed of the following subset Series: GSE21948: High Density custom Agilent 44K CGH array analysis of 7q and TET2 region in myelodysplastic/myeloproliferative neoplasms GSE21990: Affymetrix SNP 6.0 array data for myelodysplastic/myeloproliferative neoplasms Refer to individual...
ORGANISM(S): Homo sapiens 
2010-06-30 | E-GEOD-21991 | biostudies-arrayexpress
UnknownDevelopment and Validation of Nomograms Predictive of Overall and Progression-Free Survival in Patients With Oropharyngeal Cancer.
Not available
S-EPMC5736236 | biostudies-literature
TranscriptomicsHigh Density custom Agilent 44K CGH array analysis of 7q and TET2 region in myelodysplastic/myeloproliferative neoplasms
Abnormalities of chromosome 7q are common in myeloid malignancies. Agilent CGH arrays targeted to 7q and Affymetrix SNP 6.0 arrays were used to characterise 7q aUPD and deletions. Sample #017 in this data series showed a microdeletion encompassing EZH2. Screening of a total of 614 cases with myeloid...
ORGANISM(S): Homo sapiens 
2010-06-30 | E-GEOD-21948 | biostudies-arrayexpress
TranscriptomicsCircadian patterns of gene expression in the human brain and disruption in major depressive disorder
A cardinal symptom of Major Depressive Disorder (MDD) is the disruption of circadian patterns. Yet, to date, there is no direct evidence of circadian clock dysregulation in the brains of MDD patients. Circadian rhythmicity of gene expression has been observed in animals and peripheral human tissues,...
ORGANISM(S): Homo sapiens 
2013-04-20 | E-GEOD-45642 | biostudies-arrayexpress
UnknownSNAPSHOT USA 2020: A second coordinated national camera trap survey of the United States during the COVID-19 pandemic.
Not available
S-EPMC9347782 | biostudies-literature
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