Jones John J - OmicsDI

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Unknown (807)
Genomics (122)
Proteomics (18)
Transcriptomics (15)
Metabolomics (8)
Genomic (2)

Organisms

Homo sapiens (135)
Rattus norvegicus (3)
Arabidopsis thaliana (2)
Mus musculus (2)
Populus x canadensis (1)
Ovis aries (1)
Triticum aestivum (1)
Wolbachia endosymbiont of Culex quinquefasciatus Pel (1)

Repository

EGA (118)
biostudies-arrayexpress (17)
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pride (7)
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Tissue

Cell culture (2)
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Disease

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Technology Type

Illumina 15K (8)
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AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
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Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
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Instrument Platform

Q Exactive (4)
Q TRAP (4)
Illumina MiSeq (2)
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Q Exactive Plus (1)
Thermo Q-Exactive Orbitrap (1)
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5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Varian (1)
LTQ Orbitrap (1)

Publication Date

2023 (7)
2021 (6)
2008 (5)
2014 (3)
2010 (3)
2022 (3)
2018 (2)
2015 (2)
2012 (2)
2020 (2)
2017 (2)
2026 (2)
2024 (1)
2016 (1)
2013 (1)
2025 (1)

UNIPROT ID/AC

160488.PP_0985 (1)
160488.PP_3365 (1)
ACCA_PSEPK (1)
ACCD_PSEPK (1)
ACP_PSEPK (1)
ACSA1_PSEPK (1)
ADE_PSEPK (1)
AGUA_PSEPK (1)
AK_PSEPK (1)
ALGB_PSEPK (1)
ALGC_PSEPK (1)
ALLA_PSEPK (1)
AMGK_PSEPK (1)
AMPA_PSEPK (1)
ANMK_PSEPK (1)
APAG_PSEPK (1)
APAH_PSEPK (1)
APEB_PSEPK (1)
APT_PSEPK (1)
ARCA_PSEPK (1)
ARGA_PSEPK (1)
ARGB_PSEPK (1)
ARGC1_PSEPK (1)
ARGD_PSEPK (1)
ARGJ_PSEPK (1)
ARLY_PSEPK (1)
AROB_PSEPK (1)
AROC_PSEPK (1)
AROK_PSEPK (1)
AROQ1_PSEPK (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:28044 (4)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16634 (3)
CHEBI:17154 (3)
CHEBI:17822 (3)
CHEBI:22653 (3)
CHEBI:26986 (3)
CHEBI:27897 (3)
CHEBI:1014 (2)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15891 (2)
CHEBI:16135 (2)
CHEBI:16196 (2)
CHEBI:16449 (2)
CHEBI:16530 (2)
CHEBI:16704 (2)
CHEBI:16737 (2)
CHEBI:16765 (2)
CHEBI:16796 (2)
CHEBI:16811 (2)
CHEBI:16958 (2)
CHEBI:17126 (2)
CHEBI:17234 (2)
CHEBI:17351 (2)
CHEBI:17405 (2)
CHEBI:17505 (2)
CHEBI:17521 (2)

Metabolite Name

Creatinine (2)
Skatole (2)
Tryptamine (2)
()-(alpha)-Kainic Acid (1)
()-1-Octen-3-ol (1)
()-Dolichodial (1)
(+)-(S)-6-[4-Chloro-a-(1H-1,2,4-triazol-1-yl)benzyl]-1-methyl-1H-benzotriazole (1)
(+)-(S)-Citalopram oxalate (1)
(+)-10-Deoxymethynolide (1)
(+)-Alantolactone (1)
(+)-Costunolide (1)
(+)-D-Isosorbide (1)
(+)-Etomidate (1)
(+)-Flabellidine (1)
(+)-Fustin (1)
(+)-Gallocatechin (1)
(+)-Lacosamide (1)
(+)-Valencene (1)
(+)-[6]-Gingerol (1)
(+)-aristolochene (1)
(+)-aromadendrin (1)
(+)-beta-selinene (1)
(+)-delta-selinene (1)
(+)-endo-beta-bergamotene (1)
(+)-lariciresinol (1)
(+)-medicarpin (1)
(+)-podocarpic acid (1)
(-)-(S)-Equol (1)
(-)-12(R),13(S)-vernolic acid (1)
(-)-8-Prenylnaringenin (1)

First Public Date

2024 (2)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (3)
ChIP-seq (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)

Release Date

2022 (94)
2021 (91)
2023 (78)
2024 (74)
2025 (70)
2020 (51)
2018 (47)
2016 (43)
2015 (39)
2019 (38)
2017 (34)
2014 (29)
2012 (28)
2010 (22)
2011 (21)
2009 (14)
2008 (13)
2013 (10)
2026 (8)
2007 (7)
2006 (5)
2004 (2)
2000 (2)
2005 (1)
2003 (1)
2002 (1)
1999 (1)

Lab affiliation

1.MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford OX3 9DS, UK 2.CRUK/MRC Oxford Institute for Radiation Oncology, Department of Oncology, University of Oxford, Oxford OX3 7DQ, UK (1)
BCI Mass spectrometry Facility 1.02 & 1.03 1st floor Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
UCSF (1)
University of Manchester (1)
University of Victoria (1)
Yale University Department of Molecular Biophysics and Biochemistry (1)

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Transcription profiling by array of Arabidopsis mutant for rhd2/ArtbohC

Aim: To determine the effect of an AtrbohC mutation on the gene expression pattern in primary root tissue, to identify candidate genes acting downstream of AtrbohC, particularly any encoding antioxidant-related proteins, signal transduction components or proteins known to be required for normal roo...

ORGANISM(S): Arabidopsis thaliana

2008-06-14 | E-GEOD-6165 | biostudies-arrayexpress

A Recurrent Mosaic Mutation in SMO, Encoding the Hedgehog Signal Transducer Smoothened, Is the Major Cause of Curry-Jones Syndrome.

Not available

S-EPMC4908219 | biostudies-literature

Safety and efficacy of aerobic training in patients with cancer who have heart failure: an analysis of the HF-ACTION randomized trial.

Not available

S-EPMC4121507 | biostudies-literature

Cell-derived extracellular matrix (CDM) from human pancreatic ductal cells (HPDE)

Pancreatic ductal adenocarcinoma (PDAC) is characterised by an abundant desmoplastic reaction which includes an excess production of extracellular matrix. The extracellular matrix produced by HPDE cells (H6c7), with and without expression of mutant KRas G12V, was analysed by LC-MSMS

ORGANISM(S): Homo sapiens (Human)

2022-05-20 | PXD027803 | Pride

Ecm Pdac

Limitations to Starch Utilization in Barramundi (Lates calcarifer) as Revealed by NMR-Based Metabolomics

Practical diets for commercial barramundi production rarely contain greater than 10% starch, used mainly as a binding agent during extrusion. Alternative ingredients such as digestible starch have shown some capacity to spare dietary protein catabolism to generate glucose. In the present study, a ca...

2020-07-30 | MTBLS1103 | MetaboLights

Transcription profiling of Arabidopsis AtrbohB null mutant in response to heat to examine the molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis

We have been determining signalling components essential for heat tolerance in Arabidopsis thaliana (Larkindale, J., and Knight, M.R. (2002). Protection against heat stress-induced oxidative damage in Arabidopsis involves calcium, abscisic acid, ethylene, and salicylic acid. Plant Physiol 128, 682-6...

ORGANISM(S): Arabidopsis thaliana

2008-06-14 | E-GEOD-6154 | biostudies-arrayexpress

Feasibility of Quality Measures for the Diagnosis and Treatment of Carpal Tunnel Syndrome.

Not available

S-EPMC8132589 | biostudies-literature

An optimal stratified Simon two-stage design.

Not available

S-EPMC5405342 | biostudies-literature

The Activity-Induced Long Non-Coding RNA Meg3 Modulates AMPA Receptor Surface Expression in Primary Cortical Neurons.

Not available

S-EPMC5413565 | biostudies-literature

Design, set-up and utility of the UK facioscapulohumeral muscular dystrophy patient registry.