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TranscriptomicsTranscription profiling of yeast under conditions of ammonium, L-alanine or L-glutamine limitation
Response of Saccharomyces cerevisiae to Ammonium, L-alanine, or L-glutamine Limitation. The protrotophic laboratory strain CEN.PK113-7D (MAT a) was grown in laboratory fermentors with a working volume of 1 litre at dilution rate (D) of 0.20 per hour (in triplicate for each nitrogen limited condition...
ORGANISM(S): Saccharomyces cerevisiae 
2006-06-13 | E-MEXP-724 | biostudies-arrayexpress
ProteomicsProteome of L-carnitine-grown Eubacterium limosum ATCC 8486
Eubacterium limosum ATCC 8486 makes acetate and butyrate from various substrates and is found in the human intestine. The proteome of L-carnitine-grown Eubacterium limosum was obtained in order to identify enzymes required for growth on L-carnitine, in particular to identify components that are uniq...
ORGANISM(S): Eubacterium limosum Bacteria 
2020-06-19 | PXD013961 | Pride
Carnitine demethylation Human gut isolate Acetogenic bacteria 
MetabolomicsCore Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts

The composition and changes of the fungal population and of the metabolites present in grapes and in ferments of Vitis vinifera L. cv. Corvina, one of the major components of the Amarone musts, were dissected aiming at the identification of constant characteristics possibly influenced by the prod...

2017-11-14 | MTBLS392 | MetaboLights
TranscriptomicsExposure time during postembryonic development influences persistent biological effects of the insecticide carbaryl in green frogs (Lithobates clamitans)
The impact of pesticides on amphibian metamorphosis may vary depending on developmental stage of individuals during the exposure period. Some anurans experience increased rates of development when exposure to the insecticide carbaryl occurs later in larval development. We exposed developing northern...
ORGANISM(S): Rana clamitans 
2013-02-21 | E-GEOD-42338 | biostudies-arrayexpress
ProteomicsSodium valproate is protective in a transgenic zebrafish model of Machado Joseph disease
The neurodegenerative disease Machado Joseph disease (MJD, also known as spinocerebellar ataxia-3) is a fatal disease that impairs control and co-ordination of movement. MJD is caused by expansion of a trinucleotide (CAG) repeat region within the ATXN3 gene, encoding a long polyglutamine (polyQ) reg...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2021-08-23 | PXD009612 | Pride
Ataxin-3 Label-free quantitative proteomics Machado joseph disease Polyq Zebrafish 
ProteomicsThe effect of oxygen on bile resistance in L. monocytogenes
Listeria monocytogenes is a gram-positive, facultative anaerobe food-borne pathogen that is the causative agent of listeriosis. Upon ingestion, L. monocytogenes is subjected to a variety of non-specific host defenses such as bile. The main component of bile is bile salts which is known to be bacteri...
ORGANISM(S): Listeria monocytogenes 
2017-05-03 | PXD002243 | Pride
Egde Listeria monocytogenes Hcc23 10403s F2365 Egd 
ProteomicsStructural basis for L-isoaspartyl-containing protein recognition by the PCMTD1 cullin-RING E3 ubiquitin ligase
LC/MS identification of proteins co-immunoprecipitated with PCMTD1 and PCMTD1 P243 F247 stably expressed in FlpIn 293 cells.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-05-19 | MSV000097912 | MassIVE
TranscriptomicsModulation of PrfA activity in Listeria monocytogenes upon growth in different culture media
PrfA activity was studied in L. monocytogenes strain EGD and in an isogenic prfA deletion mutant (EGDΔprfA) carrying multiple copies of the wild-type prfA or the mutant prfA* gene (strains EGDΔprfApPrfA and EGDΔprfApPrfA*) after growth in brain heart infusion (BHI), Luria-Bertani broth (LB) or a def...
ORGANISM(S): Listeria monocytogenes 
2008-11-30 | E-GEOD-12151 | biostudies-arrayexpress
TranscriptomicsSNP arrays to detect copy number changes in t(1;19) E2A-PBX1 positive leukemias
The experiment was to detect the identity and range of copy number alterations in a subtype of childhood leukemia defined by t(1;19) translocaitons The data will be presented in the manuscript "Direct and indirect targets of the E2A-PBX1 leukemia-specific fusion protein" to be published in...
ORGANISM(S): Homo sapiens 
2013-11-23 | E-GEOD-52654 | biostudies-arrayexpress
TranscriptomicsPyruvate carboxylase and carbon metabolism in Listeria monocytogenes
Transcriptional profile of wild type L. monocytogenes (EGDe) and a pycA mutant strain was compared on growth in BHI. The human pathogen L. monocytogenes is a facultatively intracellular bacterium that survives and replicates in the cytosol of many mammalian cells. The listerial metabolism, especia...
ORGANISM(S): Listeria monocytogenes 
2010-02-09 | E-GEOD-19014 | biostudies-arrayexpress
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