Joshi B B - OmicsDI

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Unknown (1821)
Transcriptomics (79)
Proteomics (38)
Genomics (17)
Metabolomics (4)
Genomic (1)

Organisms

Homo sapiens (49)
Andropogon gerardi (33)
Bacteria (33)
Canis lupus familiaris (33)
Chromatiales bacterium OalgGamma1 (33)
Clavibacter nebraskensis NCPPB 2581 (33)
Cnidaria (33)
Ensifer adhaerens (33)
Fasciola (33)
Human alphaherpesvirus 1 strain 17 (33)
Human alphaherpesvirus 1 strain KOS (33)
Human betaherpesvirus 5 (33)
Human herpesvirus 2 strain 186 (33)
Mus musculus (24)
Saccharomyces cerevisiae (4)
Glycine max (3)
Brassica juncea (2)
Triticum aestivum (2)
Bradyrhizobium diazoefficiens USDA 110 (1)
Cicer arietinum (1)
environmental samples (1)
Bifidobacterium breve UCC2003 (1)
Salmonella enterica (1)
Lolium perenne (1)
mixed sample (1)
Solanum tuberosum (1)
Plasmodium falciparum (1)
Escherichia coli K-12 (1)
Canis lupus familiaris (1)
Rattus norvegicus (1)

Organisms

Triticum aestivum (1)

Repository

biostudies-arrayexpress (87)
pride (33)
EGA (6)
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Disease

Spinal muscular atrophy (NCI Metathesaurus C0026847) has DiseaseStaging postsymptomatic (1)
Acute leukemia (1)
Barrett's adenocarcinoma (1)
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Colorectal cancer (1)
Congenital disorder of glycosylation Iq (1)
Dilatation of the ascending aorta (1)
Disease free (1)
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Technology Type

Mass Spectrometry (33)
Shotgun proteomics (19)
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Data-dependent acquisition (6)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
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Instrument Platform

Illumina MiSeq (3)
Illumina HiSeq 2000 (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
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Illumina Truseq RNA Sample Preparation Kit (1)
TruSeq RNA Sample Preparation Kit (Illumina) (1)
Rneasy Plant Mini Kit (Qiagen) (1)
Illumina NovaSeq X (1)
KAPA mRNA HyperPrep Kit (Roche), SS NGS fragment kit (1-6,000 bp; Agilent) (1)
RNAdvance Cell v2, Biomek i7 Hybrid robotic workstation (both BeckmanCoulter) (1)
N/a (1)
NextSeq 550 (1)
NextSeq 500 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Gas Chromatography MS - (1)
Q Exactive (1)
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Liquid Chromatography MS - negative - hilic (1)

Publication Date

2015 (21)
2014 (11)
2016 (9)
2012 (8)
2018 (7)
2008 (7)
2025 (7)
2026 (6)
2023 (6)
2022 (6)
2021 (6)
2013 (6)
2011 (6)
2019 (5)
2010 (4)
2007 (3)
2017 (3)
2009 (2)
2024 (2)
2020 (2)
2005 (1)

CHEBI ID

CHEBI:16113 (2)
CHEBI:17822 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:22653 (2)
CHEBI:18186 (2)
CHEBI:28757 (2)
CHEBI:37684 (2)
CHEBI:26986 (2)
CHEBI:16811 (2)
CHEBI:17234 (2)
CHEBI:18257 (2)
CHEBI:16750 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:15428 (2)
CHEBI:17148 (2)
CHEBI:17268 (2)
CHEBI:28044 (2)
CHEBI:16335 (2)
CHEBI:27266 (2)
CHEBI:17859 (2)
CHEBI:15891 (2)
CHEBI:16449 (2)
CHEBI:17596 (2)
CHEBI:57600 (1)
CHEBI:46398 (1)
CHEBI:65180 (1)
CHEBI:57299 (1)
CHEBI:132542 (1)

Metabolite Name

Syringaldehyde (1)
Guanosine-monohosphate (1)
Adenosine 5'-Triphosphate (1)
Cytidine Triphosphate (1)
5'-Cytidylic Acid (1)
Guanosine-diphosphate (1)
Guanosine 5'-triphosphate (1)
PI (40:6) (1)
PI (38:6).(16:0/22:6) (1)
PI (38:5)c (1)
PG (36:1)b.(18:0/18:1) (1)
PG (36:1)a.(18:0/18:1) (1)
PC (40:8)a.(18:2/22:6) (1)
PC (40:7)b.(18:1/22:6) (1)
PC (40:7)a.(18:1/22:6) (1)
PC (40:6).(18:0/22:6) (1)
PC (40:5)a.(18:0/22:5) (1)
PC (38:6)c.(18:2/20:4) (1)
PC (38:6)a.(16:0/22:6) (1)
PC (38:4).(18:0/20:4) (1)
PC (38:3).(18:0/20:3) (1)
PC (38:2)a.(18:0/20:2) (1)
PC (38:1).(18:0/20:1) (1)
PC (37:1).(18:0/19:1) (1)
PC (36:6).(14:0/22:6) (1)
PC (36:5)a.(16:0/20:5) (1)
PC (36:3)b.(18:1/18:2) (1)
PC (36:2)c.(18:1/18:1) (1)
PC (36:2)b.(18:0/18:2) (1)
PC (36:2)a.(16:0/20:2) (1)

First Public Date

2026 (1)
2015 (1)

Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (17)
ChIP-seq (8)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (4)
Methylation profiling by array (3)
Unknown experiment type (2)
Genotyping by array (2)
Transcription profiling by SAGE (1)
Transcription profiling by RT-PCR (1)
ATAC-seq (1)
Other (1)
ScATAC-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (241)
2021 (237)
2023 (207)
2024 (185)
2025 (179)
2019 (127)
2020 (122)
2018 (93)
2015 (84)
2017 (80)
2016 (77)
2014 (57)
2013 (45)
2012 (43)
2026 (30)
2011 (28)
2010 (23)
2008 (15)
2009 (14)
2007 (13)
2005 (3)
2006 (1)
2004 (1)
2003 (1)
2002 (1)
2000 (1)

Lab affiliation

Copenhagen Center for Glycomics and Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, DK-2200 Copenhagen N, Denmark (2)
Akhilesh Pandey, M.D., Ph.D. Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (1)
Charles Perkins Centre, University of Sydney (1)
Copenhagen Center for Glycomics (CCG), Glyco-MS Group Department of Cellular and Molecular Medicine University of Copenhagen (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark. (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biophysics, National Institute of Mental Health and Neurosciences (NIMHANS). India. (1)
Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Immunology, University of Pittsburgh (1)
Department of Laboratory Medicine and Pathology Mayo Clinic Rochester Minnesota (1)
Department of Radiation Oncology, University of Colorado, Anschutz Medical Campus, Aurora, CO, 80045, United States Department of Microbiology and Immunology, University of Colorado, Anschutz Medical Campus, Aurora, CO, 80045, United States (1)
Department of Zoology, School of Natural Sciences, National University of Ireland, Galway. (1)
Departments of Chemistry, Biological Sciences, Pathology, Microbiology and Immunology, Vanderbilt University (1)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (1)
Dept. of Biochemistry, Universidade Federal do Parana, Curitiba-PR, Brazil (1)
Division of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur-176061, Himachal Pradesh, India (1)
HMI, IMB, UiT The Arctic University of Norway, Norway (1)
Harvard University, Department of Cell Biology (1)
Institute of Physiology of the Czech Academy of Sciences, Laboratory of Structural Biology of Signaling Proteins, Division BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic (1)
Karoliniska Institutet, Department of Oncology-Pathology (1)
King's British Heart Foundation Centre, King's College London, London, UK (1)
Mayo Clinic, Rochester, USA (1)
Molecular Genetics, RPTU Kaiserslautern, Germany (1)
National Institute of Mental Health and Neurosciences (1)
Professor and Deputy Director (1)
UCSF (1)
UQ Diamantina Institute (1)
University of Colorado - Anschutz Medical Campus, Department of Biochemistry and Molecular Genetics, Aurora, CO USA (1)
University of Copenahgen, Copenhagen Center for Glycomics (1)

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Ikaros mutation confers integrin-dependent pre-B cell survival and progression to acute lymphoblastic leukemia

Deletion of the Ikaros DNA-binding domain generates dominant-negative isoforms that interfere with Ikaros family activity and correlate with poor prognosis in human precursor B cell acute lymphoblastic leukemias (B-ALL). Here, we show that conditional inactivation of the Ikaros DNA binding domain i...

ORGANISM(S): Mus musculus

2014-02-09 | E-GEOD-53401 | biostudies-arrayexpress

Effect of MHC II expression in pro-B cells: Pre-B cells and follicular B cells from wild-type and MHC II conditional mice

Hardy’s Fraction D bone marrow pre-B cells and splenic follicular B cells were purified by flow cytometry according to MHC II expression from wild-type and ItgaxcreH2-Ab1c MHC II conditional mice and transcriptionally profiled by RNA-seq. Duplicate or triplicate samples for each genotype and level o...

ORGANISM(S): Mus musculus

2018-08-07 | E-MTAB-6765 | biostudies-arrayexpress

A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L.

Purpose: To identify high temperature, sailinity and drought-responsive miRNAs at genome wide level in B. juncea var varuna. Results: In this study four small RNA libraries viz. B. juncea control (BJC), B. juncea high temperature stressed (BJH), B. juncea salinity stressed (BJS) and B. juncea drough...

ORGANISM(S): Brassica juncea

2014-08-20 | E-GEOD-53242 | biostudies-arrayexpress

B-cell-independent sialylation of IgG.

Not available

S-EPMC4932940 | biostudies-literature

aDolescent and prEconception health peRspectiVe of Adult Non-communicable diseases (DERVAN): protocol for rural prospective adolescent girls cohort study in Ratnagiri district of Konkan region of India (DERVAN-1).

Not available

S-EPMC7476477 | biostudies-literature

Transcription profiling of soybean nodulation by Bradyrhizobium japonicum

Legumes interact with nodulating bacteria that convert atmospheric nitrogen into ammonia for plant use. This nitrogen fixation takes place within root nodules that form after infection of root hairs by compatible rhizobia. Using cDNA microarrays, we monitored gene expression in soybean (Glycine max)...

ORGANISM(S): Glycine max

2008-02-04 | E-GEOD-10340 | biostudies-arrayexpress

Subtractive hybridization identifies a novel predicted protein mediating epithelial cell invasion by virulent serotype III group B Streptococcus agalactiae.

Not available

S-EPMC308952 | biostudies-literature

IRF4 is a suppressor of c-Myc induced B cell leukemia.

Not available

S-EPMC3144921 | biostudies-literature

Metabolite profiling and evaluation of antioxidant, antidiabetic, and antibacterial potential of Thymus linearis Benth. supported by molecular docking and PASS prediction.

Not available

S-EPMC12820053 | biostudies-literature

Targeting the hepatitis B cccDNA with a sequence-specific ARCUS nuclease to eliminate hepatitis B virus in vivo.