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TranscriptomicsDeep Sequence Analysis of non-small cell lung cancer: Integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations
In this manuscript, we have used RNA-Sequencing experiment to obtain and integrate a variety of genomic features in order to identify signaling pathways that are associated to mutant KRAS lung tumors. 8 lung adenocarcinomas with mutant KRAS in lung tumors and 8 lung adenocarcarcinomas without KRAS m...
ORGANISM(S): Homo sapiens 
2012-06-07 | E-GEOD-34914 | biostudies-arrayexpress
TranscriptomicsBBBomics - Human Blood Brain Barrier Transcriptomics Hub [miRNA-seq]
Functional and structural dysfunction of the blood brain barrier (BBB) leads to severe alterations in brain physiology and is believed to trigger neurodegeneration. To investigate the molecular mechanisms driving the BBB dysfunction, very few human BBB cell culture models are available;of which, the...
ORGANISM(S): Homo sapiens 
2016-03-17 | E-GEOD-76530 | biostudies-arrayexpress
TranscriptomicsImpact of library preparation on downstream analysis and interpretation of RNA-seq data: comparison between Illumina PolyA and NuGEN Ovation protocol
Objectives: The sequencing by the PolyA selection is the most common approach for library preparation. With limited amount or degraded RNA, alternative protocols such as the NuGEN have been developed. However, it is not yet clear how the different library preparations affect the downstream analyses ...
ORGANISM(S): Homo sapiens 
2013-08-28 | E-GEOD-47933 | biostudies-arrayexpress
UnknownCopy number variation and cytidine analogue cytotoxicity: a genome-wide association approach.
Not available
S-EPMC2894803 | biostudies-literature
UnknownGemcitabine and arabinosylcytosin pharmacogenomics: genome-wide association and drug response biomarkers.
Not available
S-EPMC2770319 | biostudies-literature
UnknownIM-TORNADO: a tool for comparison of 16S reads from paired-end libraries.
Not available
S-EPMC4266640 | biostudies-literature
UnknownDiscovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.
Not available
S-EPMC3930546 | biostudies-literature
TranscriptomicsBBBomics - Human Blood Brain Barrier Transcriptomics Hub
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Homo sapiens 
2016-03-17 | E-GEOD-76531 | biostudies-arrayexpress
UnknownCD38 expression, function, and gene resequencing in a human lymphoblastoid cell line-based model system.
Not available
S-EPMC2892000 | biostudies-literature
MetabolomicsSmall intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders
Small intestinal bacterial overgrowth (SIBO) has been implicated in symptoms associated with functional gastrointestinal disorders (FGIDs), though mechanisms remain poorly defined and treatment involves non-specific antibiotics. Here we show that SIBO based on duodenal aspirate culture reflects an o...
2019-04-30 | MTBLS876 | MetaboLights
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