Kang M H MH - OmicsDI

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Unknown (330)
Metabolomics (10)
Genomics (9)
Transcriptomics (6)
Proteomics (5)

Organisms

Homo sapiens (15)
Mus musculus (2)
Akkermansia muciniphila ATCC BAA-835 (1)

Repository

EGA (9)
MetaboLights (9)
biostudies-arrayexpress (6)
pride (3)
MassIVE (2)
GNPS (1)

Tissue

Cell culture (1)
Epithelial cell (1)

Technology Type

Mass spectrometry (8)
Mass Spectrometry (3)
Shotgun proteomics (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (2)
Xevo G2 Q-Tof (1)
Q Exactive HF (1)
TripleTOF 6600 (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2023 (9)
2011 (3)
2015 (2)
2020 (2)
2024 (2)
2009 (1)
2017 (1)
2019 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:27997 (3)
CHEBI:28865 (3)
CHEBI:34687 (3)
CHEBI:35038 (3)
CHEBI:64563 (3)
CHEBI:10136 (2)
CHEBI:116314 (2)
CHEBI:138367 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15354 (2)
CHEBI:15724 (2)
CHEBI:15756 (2)
CHEBI:16040 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16312 (2)
CHEBI:16335 (2)
CHEBI:16551 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16755 (2)
CHEBI:16811 (2)
CHEBI:17154 (2)
CHEBI:173703 (2)
CHEBI:17568 (2)
CHEBI:17748 (2)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Chenodeoxycholic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Kynurenic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
Myristoleic acid (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Spermidine (2)
Taurocholic acid (2)
(7Z,10Z)-hexadecadienoylcarnitine (1)
(9Z,12Z)-3-hydroxyhexadecadienoylcarnitine (1)
(R)-3-Hydroxybutyric acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(ÃÂ±)-2-(1-Methylpropyl)-4,6-dinitrophenol (1)
1,11-Undecanedicarboxylic acid (1)
1,3,5-Trihydroxybenzene (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)

Study type

Transcription profiling by array (4)
Methylation profiling by array (2)

Release Date

2018 (42)
2025 (37)
2020 (36)
2024 (33)
2023 (29)
2021 (29)
2022 (23)
2019 (18)
2015 (14)
2016 (14)
2017 (12)
2014 (12)
2012 (12)
2011 (8)
2026 (8)
2009 (3)
2013 (3)
2008 (3)

Lab affiliation

Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (1)
Department of Molecular and Cellular Oncology, MD Anderson Cancer Center, Houston, TX USA (1)
Group for Biometrology, Korea Research Institute of Standards and Science (KRISS), Daejeon, 34113, Republic of Korea (1)

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Identification of DNA Methylation Markers for Lineage Commitment of in vitro Hepatogenesis [methylation profiling]

Hepatocytes that have differentiated from human embryonic stem cells have great potential for the treatment of liver disease as well as for drug testing. Moreover, in vitro hepatogenesis is a powerful model system for studying the molecular mechanisms underlying liver development. DNA methylation is...

ORGANISM(S): Homo sapiens

2011-06-10 | E-GEOD-25047 | biostudies-arrayexpress

Identification of DNA Methylation Markers for Lineage Commitment of in vitro Hepatogenesis [mRNA profiling]

ORGANISM(S): Homo sapiens

2011-06-10 | E-GEOD-25046 | biostudies-arrayexpress

Identification of pathogenic microRNAs in Helicobacter pylori-associated gastric cancer

To identify dysregulated miRNA(s) upon infection with H. pylori during different pre-malignant and malignant stages of gastric cancer in a mouse model miRNA expression in pre-neoplastic and neoplastic lesions in murine stomachs induced by H. pylori and N-methyl-N-nitrosourea (MNU) after 12 months wa...

ORGANISM(S): Mus musculus

2015-03-04 | E-GEOD-62503 | biostudies-arrayexpress

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

Nardilysin-Regulated Scission Mechanism Activates Polo-like Kinase 3 to Suppress the Development of Pancreatic Cancer

Pancreatic ductal adenocarcinoma (PDAC) develops through step-wise genetic and molecular alterations including Kras mutation and inactivation of apoptotic pathways. Here, we find that development of anoikis resistance and metastasis of KrasG12D-driven PDAC in mice is accelerated by deleting Plk3, ex...

ORGANISM(S): Homo sapiens (Human)

2023-12-23 | PXD042993 | Pride

Akkermansia muciniphila secretome

In this study, we attempted to identify a new probiotic effector molecule of A. muciniphila that plays a role in modulating host cells through secretome analysis. We performed proteomic profiling of secretome of A. muciniphila cultivated under basal medium and BHI medium (supplemented with 0.2% muci...

ORGANISM(S): Akkermansia muciniphila ATCC BAA-835

2024-03-14 | PXD042323 | Pride

Akkermansia muciniphila Secretome Lc-ms/ms

Transient Photoinactivation of Cell Membrane Protein Activity without Genetic Modification by Molecular Hyperthermia.

Not available

S-EPMC7096286 | biostudies-literature

Lipopolysaccharides from Ralstonia solanacearum induce a broad metabolomic response in Solanum lycopersicum

Ralstonia solanacearum, one of the most destructive crop pathogens worldwide, causes bacterial wilt disease in a wide range of host plants. The major component of the outer membrane of Gram-negative bacteria, lipopolysaccharides (LPS), has been shown to function as elicitors of plant defense lead...

2023-08-08 | MTBLS7324 | MetaboLights

Expression and Purification of Extracellular Solute-Binding Protein (ESBP) in Escherichia coli, the Extracellular Protein Derived from Bifidobacterium longum KACC 91563.

Not available

S-EPMC6728822 | biostudies-literature

Identification of DNA Methylation Markers for Lineage Commitment of in vitro Hepatogenesis

This SuperSeries is composed of the following subset Series: GSE25046: Identification of DNA Methylation Markers for Lineage Commitment of in vitro Hepatogenesis [mRNA profiling] GSE25047: Identification of DNA Methylation Markers for Lineage Commitment of in vitro Hepatogenesis [methylation profili...

ORGANISM(S): Homo sapiens

2011-11-25 | E-GEOD-25048 | biostudies-arrayexpress

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