Kang R R - OmicsDI

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Unknown (6256)
Transcriptomics (176)
Proteomics (117)
Genomics (51)
Metabolomics (44)
Genomic (4)
Models (3)
Multiomics (3)
Other (2)

Organisms

Homo sapiens (171)
Mus musculus (85)
Arabidopsis thaliana (21)
Rattus norvegicus (9)
Ogataea angusta (4)
Oryza sativa (4)
Gallus gallus (3)
Sus scrofa domesticus (3)
Locusta migratoria (2)
Canis lupus familiaris (2)
Saccharomyces cerevisiae (2)
Metazoa (1)
Thermococcus onnurineus NA1 (1)
Populus alba x Populus glandulosa (1)
unidentified microorganism (1)
Ascaris suum (1)
Oryza longistaminata (1)
Burkholderia thailandensis (1)
human gut metagenome (1)
Vigna unguiculata (1)
Capra hircus (1)
Glycine soja (1)
Fragaria vesca (1)
Macaca mulatta (1)
Zea mays (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Glaesserella parasuis (1)
Phyllostachys edulis (1)

Organisms

Homo sapiens (2)
gut metagenome (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (194)
pride (78)
MetaboLights (37)
EGA (28)
iProX (18)
MassIVE (15)
GNPS (7)
ENA (5)
dbGaP (4)
BioModels (3)
PeptideAtlas (3)
geo (1)
GPMDB (1)
jPOST (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (17)
Blood plasma (6)
Brain (6)
Epithelial cell (6)
Liver (5)
Others (3)
Blood serum (3)
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Plant cell (3)
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Skin (3)
T cell (3)
B cell (2)
Bone marrow (2)
Cell suspension culture (2)
Colon (2)
Islet of Langerhans (2)
Lung (2)
Lymph node (2)
Pancreas (2)
Permanent cell line cell (2)
Primary cell (2)
Root (2)
Spleen (2)
Adipocyte (1)
Articular chondrocyte (1)
Bile (1)
Bile duct (1)
CD8-positive (1)

Disease

Alzheimer's disease (2)
Breast cancer (2)
Colon cancer (2)
Type 2 diabetes mellitus (2)
High risk B-precurser acute lymphoblastic leukemia (1)
Hepatocellular carcinoma-non tumorous region (1)
Liposarcoma (1)
Normal (1)
Not Available (1)
Acute leukemia (1)
Bone cancer (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Hypertrophic cardiomyopathy (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Multiple myeloma (1)
Myelodysplastic syndrome (1)
Neuroblastoma (1)
Obesity (1)
Osteoarthritis (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (78)
Shotgun proteomics (38)
Mass spectrometry (30)
Bottom-up proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (11)
Mass spectrometry assay (6)
Data-dependent acquisition (6)
Gel-based experiment (6)
Top-down proteomics (5)
Data-independent acquisition (4)
SRM/MRM (3)
NMR spectroscopy (2)
SWATH MS (2)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 4000 (ILLUMINA) (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - negative - reverse phase (12)
Liquid Chromatography MS - negative - hilic (6)
Xevo G2 Q-Tof (5)
Liquid Chromatography MS - positive - hilic (5)
Illumina NovaSeq 6000 (3)
Q Exactive HF (3)
Orbitrap Exploris 480 (3)
Q Exactive (3)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - negative - reverse-phase (3)
Liquid Chromatography MS - positive - reverse-phase (3)
Illumina HiSeq 2000 (2)
TripleTOF 6600 (2)
LTQ Orbitrap Velos (2)
Orbitrap Fusion (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - positive (2)
Illumina Genome Analyzer II (1)
- (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
6550 iFunnel Q-TOF LC/MS (1)
Q Exactive Plus (1)
Instrument (1)
LTQ Orbitrap (1)
Bruker (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)

Publication Date

2012 (35)
2013 (34)
2014 (32)
2015 (30)
2023 (26)
2026 (22)
2010 (20)
2025 (20)
2011 (17)
2021 (16)
2020 (16)
2022 (16)
2024 (14)
2017 (14)
2016 (13)
2019 (11)
2009 (7)
2005 (4)
2008 (4)
2018 (4)
2007 (3)

UNIPROT ID/AC

1433A_SOYBN (1)
1433B_SOYBN (1)
1433C_SOYBN (1)
1433D_SOYBN (1)
2SS_SOYBN (1)
3847.GLYMA01G09540.1 (1)
3847.GLYMA01G25116.1 (1)
3847.GLYMA01G27160.1 (1)
3847.GLYMA01G29440.1 (1)
3847.GLYMA01G33803.1 (1)
3847.GLYMA01G35730.1 (1)
3847.GLYMA02G04090.1 (1)
3847.GLYMA02G07430.1 (1)
3847.GLYMA02G07740.1 (1)
3847.GLYMA02G14495.1 (1)
3847.GLYMA02G17490.2 (1)
3847.GLYMA02G24818.1 (1)
3847.GLYMA02G33660.1 (1)
3847.GLYMA02G35670.1 (1)
3847.GLYMA02G40806.1 (1)
3847.GLYMA03G00640.1 (1)
3847.GLYMA03G03440.1 (1)
3847.GLYMA03G04010.1 (1)
3847.GLYMA03G06350.3 (1)
3847.GLYMA03G07300.2 (1)
3847.GLYMA03G07726.1 (1)
3847.GLYMA03G08860.1 (1)
3847.GLYMA03G11580.1 (1)
3847.GLYMA03G14150.2 (1)
3847.GLYMA03G15040.1 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:16359 (12)
CHEBI:17154 (11)
CHEBI:15354 (10)
CHEBI:17895 (10)
CHEBI:18183 (10)
CHEBI:15756 (9)
CHEBI:16196 (9)
CHEBI:16335 (9)
CHEBI:16643 (9)
CHEBI:16704 (9)
CHEBI:16737 (9)
CHEBI:16828 (9)
CHEBI:16857 (9)
CHEBI:16977 (9)
CHEBI:17191 (9)
CHEBI:17203 (9)
CHEBI:17295 (9)
CHEBI:28716 (9)
CHEBI:28875 (9)
CHEBI:15428 (8)
CHEBI:15971 (8)
CHEBI:16414 (8)
CHEBI:16919 (8)
CHEBI:17368 (8)
CHEBI:17568 (8)
CHEBI:18019 (8)
CHEBI:55328 (8)
CHEBI:116314 (7)
CHEBI:15887 (7)
CHEBI:16015 (7)

Metabolite Name

Creatinine (8)
L-Alanine (8)
L-Tyrosine (8)
Adenosine (7)
Glycine (7)
Hypoxanthine (7)
L-Histidine (7)
Pyroglutamic acid (7)
Adenine (6)
Choline (6)
Creatine (6)
Cytosine (6)
L-Glutamine (6)
L-Serine (6)
L-Threonine (6)
Malic acid (6)
Taurine (6)
Uracil (6)
Xanthine (6)
2-Phenylglycine (5)
4-Hydroxybenzaldehyde (5)
5-Aminopentanoic acid (5)
Allantoin (5)
Betaine (5)
Cholic acid (5)
Cytidine (5)
D-Proline (5)
Diethanolamine (5)
Glycocholic acid (5)
Histamine (5)

First Public Date

2025 (2)
2021 (1)
2014 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

La Trobe University, Melbourne, Australia (2)
Prometabio Research Institute, prometabio co., ltd. (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
1. Department of Pediatrics, David Geffen School of Medicine, University of California, Los Angeles, CA. 2. Neonatal/Congenital Heart Laboratory, Cardiovascular Research Laboratory, David Geffen School of Medicine, University of California, Los Angeles, CA. (1)
Associate Professor (1)
Bacteriology Department, University of Wisconsin-Madison (1)
Baylor College of Medicine (1)
Bertis R&D Division, Bertis Inc., Republic of Korea (1)
Binzhou Medical University (1)
Biotech Research and Innovation Centre (BRIC) University of Copenhagen Ole Maaløes Vej 5 2200 Copenhagen N Denmark (1)
Center for Bioanalysis, Division of Chemical and Medical Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea (1)
Center for Bioanalysis, Division of Chemical and Medical Metrology, Korea Research Institute of Standards and Science, Daejeon, 34113, Korea (1)
Center for Genomic Integrity, Institute for Basic Science, Ulsan, Korea (1)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Collaborative Innovation Center of Henan Grain Crops and State Key Laboratory of Wheat and Maize Crop Science/College of Agronomy, Henan Agricultural University, Zhengzhou, China 450001 (1)
College of Animal Science and Technology, Henan Agricultural University, China (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
DGIST, Department of new biology, Q-Bio laboratory (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark. (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark. Campusvej 55, Odense 5230 Denmark (1)
Department of Biochemistry and Molecular Biology, the University of Southern Denmark, Campusvej 55, DK-5230 Odense, Denmark (1)
Department of Biological Sciences, Korea Advanced Institute for Science and Technology (KAIST), Korea (1)
Department of Chemistry and Center for ProteoGenome Research, Korea University, Seoul 02841, Republic of Korea (1)
Department of Gastroenterology, The First Affiliated Hospital of Naval Medical University, Shanghai, 200433, China (1)
Department of Hepatobiliary Surgery, the First Affiliated Hospital(Southwest Hospital) of Army Military Medical University, Chongqing 400038, China. (1)
Department of Inflammation and Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44106, USA (1)
Department of Laboratory Medicine Department of Bioengineering and Therapeutic Sciences University of California, San Francisco (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Department of Laboratory Medicine, University of California, San Francisco, USA (1)
Department of Molecular Biolgy, Princeton University, USA (1)

IsPrivate

False (3)

Study type

Transcription profiling by array (123)
RNA-seq of coding RNA (23)
ChIP-seq (11)
Methylation profiling by array (10)
Methylation profiling by high throughput sequencing (6)
RNA-seq of non coding RNA (6)
Other (4)
ChIP-chip by tiling array (2)
Genotyping by array (2)
RNA-seq of coding RNA from single cells (2)
Human - One-color microarray (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2025 (880)
2022 (813)
2024 (701)
2023 (668)
2021 (598)
2020 (481)
2019 (362)
2018 (354)
2017 (279)
2015 (232)
2016 (231)
2014 (191)
2026 (136)
2012 (131)
2013 (123)
2011 (76)
2010 (72)
2009 (51)
2008 (33)
2007 (13)
2005 (9)
2002 (4)
2006 (3)
2003 (3)
2004 (2)
1998 (2)
2000 (1)
1999 (1)

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ATAD5 regulates R-loop by maintaining RNA helicase level and unloading PCNA at the replication fork

R-loops are formed when replicative forks collide with the transcriptional machinery and can cause genomic instability. However, it is unclear how R-loops are regulated at transcription-replication conflicts (TRC) sites and how replisome proteins are regulated to prevent R-loop formation or mediate ...

ORGANISM(S): Homo sapiens (Human)

2021-09-09 | PXD018207 | Pride