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GenomicsGenentech whole genome and transcriptome sequencing of four hepatocellular carcinoma patients

Hepatitis B virus (HBV) infection is a major risk factor for hepatocellular carcinoma (HCC). In this study we sequenced the whole genome (~80X) and transcriptome of tumor and non-tumor samples from four HCC patients and identified over two hundred HBV integration sites. We found significant clona...

phs000384.v1.p1 | EGA
GenomicsDiverse modes of genomic alterations in hepatocellular carcinoma
Hepatocellular carcinoma is the most prevalent type of liver cancer. We intended to study the genomic landscape of this disease. We conducted whole-genome, exome and transcriptome sequencing for 42 patients. We show diverse modes in which the HCC genome is affected in these patients, including well-...
EGAS00001000824 | EGA
GenomicsWGS of liver cancer in the Japanese population
Hepatocellular carcinoma (HCC) is the third leading cancer-related cause of death and the seventh most common form of cancer worldwide, with an estimate of more than 700,000 new cases each year. The most established risk factors of HCC are chronic HBV and HCV infection. HBV infection is responsible ...
EGAS00001000678 | EGA
Genomicsrnaseq-22hcc - samples
RIKEN collection WGS and RNA-seq reads for 66 HBV-associated HCC and matched blood or liver samples from 22 donors.
EGAD00001001035 | EGA
Genomicsicgc-liri-jp_release16 - samples
RIKEN collection WGS reads for 100 HCC and matched blood samples from 50 donors submitted to ICGC for release 16
EGAD00001000842 | EGA
Genomicsriken_wgs_mc_im_hcc - samples
RIKEN collection of WGS read of 59 multi-centric liver cancers or intra-haptatic metastasis and matched blood samples from 19 donors.
EGAD00001001643 | EGA
Genomicsena-DATASET-Genentech-13-10-2014-16:40:50:136-199 - samples
Whole genome data (Complete genomics platform) for the study EGAS00001000824
EGAD00001001034 | EGA
Genomicsicgc-liri-jp_release15 - samples
RIKEN collection WGS reads for 321 HCC and blood matched samples from 158 donors submitted to ICGC for release 15
EGAD00001000808 | EGA
Genomicsriken_moim_wgs_13 - samples
RIKEN collection of WGS reads for 13 multicentric liver cancers or intrahepatic metastasis and matched blood samples for 12 donors.
EGAD00001001996 | EGA
Genomicsriken_wgs_hcc270 - samples
RIKEN collection of WGS reads of 530 liver cancer and matched blood samples from 260 donors.
EGAD00001001642 | EGA
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