Kf - OmicsDI

Show results for

Unknown (7773)
Transcriptomics (2734)
Genomics (368)
Proteomics (295)
Metabolomics (25)
Models (4)
Clinical (1)

Organisms

Homo sapiens (1106)
Mus musculus (785)
Arabidopsis thaliana (143)
Rattus norvegicus (107)
Drosophila melanogaster (78)
Gallus gallus (38)
Schizosaccharomyces pombe (37)
Saccharomyces cerevisiae (35)
Rhizobium leguminosarum (30)
Zea mays (30)
Oryza sativa (29)
Streptomyces coelicolor (25)
Bos taurus (24)
Sus scrofa (23)
Danio rerio (21)
Medicago truncatula (20)
Caenorhabditis elegans (19)
Xenopus laevis (13)
Solanum tuberosum (13)
Solanum lycopersicum (13)
Ovis aries (13)
Escherichia coli (12)
Salmo salar (11)
Glycine max (11)
Escherichia coli str. K-12 substr. MG1655 (10)
Staphylococcus aureus (9)
Triticum aestivum (9)
cellular organisms (2)
Eukaryota (1)
Cavia porcellus (1)

Organisms

Homo sapiens (8)
Penicillium chrysogenum KF-25 (2)
Comamonas testosteroni KF-1 (1)
Cyprinid herpesvirus 2 (1)
Fundulus heteroclitus (1)
Actinophytocola sp. (1)
Taeniopygia guttata (1)
Comamonas testosteroni (1)
Mycoplasmopsis bovis (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Glycine max (1)
Paenibacillus polymyxa (1)
Ovis aries (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (3024)
PeptideAtlas (100)
pride (93)
MassIVE (59)
EGA (49)
ENA (34)
MetaboLights (24)
jPOST (18)
geo (13)
iProX (10)
PanoramaPublic (6)
BioModels (4)
GNPS (1)

Tissue

Digestive System (95)
Colonic cancer cell (11)
Cell culture (11)
Rectal cancer cell (10)
Permanent cell line cell (8)
Venom (5)
Seedling (5)
Blood serum (3)
Skeletal muscle (3)
Blood plasma (3)
Hepatocyte (3)
Breast (2)
Seed (2)
Embryonic stem cell (2)
Milk (2)
Early embryonic cell (2)
Brain (2)
Epithelial cell (2)
Kidney (2)
Cilium (1)
Brain cancer cell line (1)
Kidney cancer cell (1)
Renal cancer cell line (1)
Skin cancer cell (1)
Cecum cancer cell line (1)
Cervical epithelial cell (1)
Liver cancer cell (1)
Neuron of the dorsal spinal cord (1)
Blood cancer cell (1)
Choroidal melanocyte (1)

Disease

Normal (8)
Wilms tumour (3)
Porphyria NOS (2)
Rheumatoid arthritis (2)
Colorectal cancer (2)
Benign prostatic hyperplasia (2)
Polycythemia due to hypoxia (1)
Burn injury (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
Large cell neuroendocrine carcinoma (1)
ER positive breast cancer (1)
Unspecified peripheral T-cell lymphoma (1)
Perilobar nephrogenic rest (1)
Hepatocellular carcinoma-non tumorous region (1)
T. circumcincta infection (1)
Breast Carcinoma (1)
Fetal growth restriction (1)
Phyllodes tumor (1)
Infected with IBDV strain F52/70 (1)
Thompson grade 3 (1)
Chondroblastoma (1)
Internal Carotid Artery Stenosis (NCI Metathesaurus C0340569) has DiseaseStaging Asymptomatic (1)
Severe acute respiratory syndrome (1)
Carotid artery disease: ASYMPTOMATIC high-grade inner carotid artery stenosis (1)
Pancreatic ductal adenocarcinoma (1)
Hodgkin lymphoma, mixed cellularity, stage IV (1)
Infected (1)
Bladder tumour (1)
Dukes D primary colon cancer (1)
Mock infected (1)

Technology Type

Mass Spectrometry (93)
Shotgun proteomics (50)
Bottom-up proteomics (22)
Mass spectrometry (20)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (10)
Gel-based experiment (7)
Mass spectrometry assay (4)
MSE (2)
Data-independent acquisition (2)
Top-down proteomics (2)
ILLUMINA, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
DiaPASEF (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (159)
NextSeq 500 (101)
Illumina HiSeq 2500 (85)
Illumina HiSeq 2000 (71)
Illumina HiSeq 4000 (61)
NextSeq 550 (23)
NextSeq 2000 (12)
Illumina MiSeq (10)
Illumina NovaSeq X (9)
Axon GenePix 4000B scanning hardware (8)
DNBSEQ-G400 (8)
Illumina Genome Analyzer IIx (6)
Illumina HiSeq 1500 (6)
Illumina HiSeq 3000 (6)
10x Chromium (5)
Illumina Genome Analyzer II (5)
Illumina HiSeq 1000 (5)
NA (4)
HiSeq X Ten (4)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
10x Chromium Controller (3)
Illumina Genome Analyzer (3)
ScanArray 5000 [PerkinElmer] (3)
G2565AA DNA microarray scanner [Agilent] (3)
Axon- GenePix4000B (3)
418 [Affymetrix] (3)
G2565BA DNA microarray scanner [Agilent] (3)
Scanning hardware (3)
Ion Torrent Proton (3)
Tru-cut biopsy needle (Marquee®, 16 G × 10 cm) (2)

Publication Date

2014 (443)
2013 (344)
2010 (342)
2012 (290)
2011 (265)
2015 (263)
2016 (198)
2008 (126)
2009 (122)
2023 (114)
2024 (102)
2021 (100)
2020 (86)
2025 (84)
2022 (83)
2026 (68)
2018 (66)
2019 (52)
2007 (49)
2017 (43)
2006 (42)
2005 (26)
2004 (18)

UNIPROT ID/AC

Q9BY44 (96)
Q9HD20 (95)
Q9UHB6 (95)
Q9P289 (95)
Q9NTZ6 (95)
Q9C0C2 (95)
Q9Y6E0-2 (95)
Q9Y6E0 (95)
Q9Y5P6 (95)
Q9Y5K6 (95)
Q9Y371 (95)
Q9Y263 (95)
Q9UMY4 (95)
Q9UGP8 (95)
Q9NT62 (95)
P51149 (1)
P20339 (1)
Q5SWA1 (1)
O76024 (1)
O75807 (1)
P35638 (1)
P18848 (1)
Q99941 (1)
P17861 (1)
O75460 (1)
Q9NZJ5 (1)
P11021 (1)
P18850 (1)
P04637 (1)
Q00987 (1)

ENSEMBL ID

ENSG00000170477 (95)
ENSG00000229353 (47)
ENSG00000147251 (18)
ENSG00000176092 (2)
ENSG00000141510 (1)
ENSG00000135679 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:30769 (7)
CHEBI:28865 (6)
CHEBI:16359 (6)
CHEBI:15428 (6)
CHEBI:6650 (6)
CHEBI:16737 (6)
CHEBI:16811 (6)
CHEBI:18257 (6)
CHEBI:30915 (6)
CHEBI:28716 (5)
CHEBI:18012 (5)
CHEBI:37024 (5)
CHEBI:15741 (5)
CHEBI:28044 (5)
CHEBI:18186 (5)
CHEBI:18095 (4)
CHEBI:15584 (4)
CHEBI:16411 (4)
CHEBI:18183 (4)
CHEBI:30805 (4)
CHEBI:17191 (4)
CHEBI:28875 (4)
CHEBI:16610 (4)
CHEBI:28842 (4)
CHEBI:16196 (4)
CHEBI:27732 (3)
CHEBI:29108 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:33699 (1)

Metabolite Name

Creatinine (4)
Tris(2-butoxyethyl) phosphate (3)
Succinic acid (3)
Methionine (3)
Cholic acid (3)
Citric acid (3)
Spermidine (3)
Alanine (3)
Succinate (3)
Pyruvate (3)
Fumarate (3)
Citrate (3)
Ornithine (3)
Glycine (3)
L-Histidine (3)
Glutathione (3)
L-Valine (3)
Val Gly (2)
Tyr Gly (2)
Glu Glu (2)
O-Arachidonoyl Glycidol (2)
13(S)-HODE methyl ester (2)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
ADMA (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Val Val (2)

First Public Date

2024 (8)
2023 (8)
2026 (6)
2013 (3)
2025 (2)
2014 (2)
2022 (1)
2020 (1)
2019 (1)
2018 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (3)

Study status

Not provided (1)

Lab affiliation

Vanderbilt University (10)
Department of Plant Biochemistry Georg-August-Universität Göttingen Justus-von-Liebig Weg 11 37077 Göttingen Germany Tel. +49-551-39-14430 (6)
Clarkson University (2)
Program in Molecular Medicine, UMass Chan Medical School (2)
Chemistry Department, University of Minnesota (2)
Proteomics (2)
Washington State University (2)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia; Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia (1)
Institute for Genetics, University of Cologne (1)
Escola Paulista de Medicina/UNIFESP (1)
Department of Electrical Engineering and Electronics University of Liverpool Liverpool (1)
Professor, Department of Cellular and Molecular Pharmacology (1)
Department of Plant Biochemistry Georg-August-Universität Göttingen Justus-von-Liebig Weg 11 37077 Göttingen Germany (1)
Program in Molecular Medicine UMass Chan Medical School Worcester MA 01605 USA (1)
Mass Spectrometry Technology Access Center at the McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA (1)
Human Heath Therapeutics, National Research Council of Canada, 100 Sussex Drive, Ottawa, Ontario, Canada K1A 0R6 (1)
Chemical and Proteomic Mass Spectrometry Core Facility, Virginia Commonwealth University (1)
Professor, School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland (1)
Department of biochemistry, Federal University of São Paulo, Brazil (1)
Executive Director Cancer Research, Peter MacCallum Cancer Centre. Head, The Sir Peter MacCallum Department of Oncology, The University of Melbourne. (1)
Stem Cell Medicine, Functional Phosphoproteomics Lab, Murdoch Children's Research Institute, Australia (1)
1Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA (1)
Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA (1)
Pfizer Worldwide Research Groton CT 06340 USA (1)
Institute for Physical Activity and Nutrition, School of Exercise and Nutrition Sciences, Deakin University (1)
Pfizer Worldwide Research Groton, CT 06340 USA (1)
Centre for Proteomic Research, Biological Sciences, University of Southampton (1)
University of Copenhagen Department of Biomedical Sciences Blegdamsvej 3B København N, DK-2200 (1)
Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY (1)
Laboratorio de Neuroinmunobiología, Departamento de Medicina Molecular y Bioprocesos. Instituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Cuernavaca, Morelos 62210, México (1)

Keyword

Atezolizumab (1)
Antibodies, Monoclonal (1)

IsPrivate

False (4)

Classification

viruses (1)

Modification

Not available (2)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (1618)
RNA-seq of coding RNA (491)
ChIP-seq (212)
RNA-seq of coding RNA from single cells (100)
RNA-seq of non coding RNA (72)
Comparative genomic hybridization by array (59)
Other (59)
Methylation profiling by high throughput sequencing (44)
ChIP-chip by tiling array (29)
Methylation profiling by array (28)
DNA-seq (27)
Animal - High-throughput sequencing (18)
Spatial transcriptomics by high-throughput sequencing (18)
Unknown experiment type (17)
ChIP-chip by array (17)
MicroRNA profiling by array (17)
RNA-seq of total RNA (17)
Transcription profiling by tiling array (16)
CUT&RUN (15)
Plant - High-throughput sequencing (12)
Single nucleus RNA sequencing (12)
Transcription profiling by RT-PCR (11)
Cell line - High-throughput sequencing (9)
Genotyping by array (9)
ATAC-seq (9)
ScATAC-seq (9)
MicroRNA profiling by high throughput sequencing (6)
Proteomic profiling by array (6)
High-throughput sequencing (5)
Animal - One-color microarray (4)

Release Date

2022 (915)
2021 (851)
2023 (840)
2025 (817)
2024 (693)
2020 (675)
2014 (629)
2015 (573)
2018 (544)
2019 (536)
2016 (535)
2013 (517)
2010 (471)
2012 (441)
2017 (436)
2011 (408)
2009 (204)
2008 (203)
2026 (151)
2007 (109)
2006 (78)
2005 (56)
2004 (41)
2003 (25)
2001 (16)
2002 (14)
2000 (7)
1998 (6)
1999 (4)
1997 (1)

Location

Australia (1)

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Penicillium chrysogenum KF-25

Penicillium chrysogenum KF-25 Genome sequencing and assembly

PRJNA172002 | ENA

Actinophytocola sp. strain:KF-1

Genome sequence analysis of Actinophytocola sp. KF-1

PRJDB18498 | ENA

Comamonas KF-1 PET degradation

Cellular and extracellular fractions of Comamonas testosteroni KF-1 grown on PET +/- acetate, labeled via diDO-IPTL (Waldbauer et al. 2017 Analytical Chemistry) for protein expression quantitation

ORGANISM(S): Comamonas Testosteroni Kf-1 (ncbitaxon:399795)

MSV000095794 | MassIVE

Penicillium chrysogenum KF-25

Penicillium chrysogenum KF-25 Transcriptome or Gene expression

PRJNA281031 | ENA

Comamonas testosteroni KF-1

Surfactant-degrading bacterium

PRJNA17465 | ENA

Mycoplasmopsis bovis strain:KF

Mycoplasmopsis bovis strain:KF Genome sequencing and assembly

PRJNA323534 | ENA

Paenibacillus polymyxa strain:KF-1