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ProteomicsProteomic profiling of saliva, salivary stones and kidney stones reveals candidate biomarkers of pathological calcification
Formation of salivary stones, a rare pathological condition, currently lacks non-surgical treatment options. The underlying causes remain unknown, although one hypothesis suggests bacterial infections may play a role. To investigate these theories and identify proteins whose altered levels might imp...
ORGANISM(S): Homo sapiens (Human) Raoultella ornithinolytica 
2026-03-11 | PXD069065 | Pride
Proteomics  saliva  salivary stones  kidney stones  biomarkers  biocalcification  sample preparation  sonication 
TranscriptomicsTranscription profiling of mouse KO Clcn5-/- model for Dents disease in kidney, bone and intestine
Mutations in ClC-5 cause Dent's disease, a disorder associated with low molecular weight proteinuria, hyperphosphaturia and kidney stones. ClC-5 is a Cl /H+-exchanger predominantly expressed in the kidney, where it facilitates the acidification of proximal tubular endosomes. The reduction in proxima...
ORGANISM(S): Mus musculus 
2006-06-13 | E-MEXP-495 | biostudies-arrayexpress
ProteomicsHuman Matrix Kidney Stones Proteome
Protein composition of human kidney matrix stones by nano-LC-MS/MS.
ORGANISM(S): Homo sapiens (Human) 
2023-10-24 | PXD033298 | Pride
Human Proteomics Kidney stone Lc-ms/ms 
TranscriptomicsKidney Stone Induces Developmental Stage-specific Alterations in Gene Expression
OBJECTIVES: Kidney stone diseases are common in premature infants, but the underlying molecular and cellular mechanisms are not fully defined. We carried out a prospective observational study using microarray analysis to identify factors that may be crucial for the initiation and progression of ston...
ORGANISM(S): Mus musculus 
2010-01-13 | E-GEOD-18160 | biostudies-arrayexpress
GenomicsUrinary Microbiome From Patients With Kidney Stones
Urinary Microbiome From Patients With Kidney Stones Raw Sequence Reads
PRJNA516685 | ENA
ProteomicsCharacterizations of HSP90-interacting complex in renal cells using tandem affinity purification and its potential role in kidney stone formation
Heat shock protein 90 (HSP90) is a highly abundant molecular chaperone that interacts with many other intracellular proteins to regulate various cellular processes. However, compositions of the HSP90-interacting complex remain underinvestigated. This study thus aimed to characterize such complex in ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-12-17 | MSV000083252 | MassIVE
GenomicsMatrix stones
Microbiome of matrix stones Raw sequence reads
PRJNA942323 | ENA
ProteomicsUnveiling potential natural promoters of calcium oxalate kidney stones in the urine via anion exchange chromatography, crystal assays, and proteomics
Knowledge of natural stone promoters in the urine was previously limited, but is essential to develop new targets for better management of calcium oxalate (CaOx) kidney stones. This work, therefore, unveils such information in the urine of CaOx stone formers (patients with stones). Urinary proteins ...
ORGANISM(S): Homo sapiens (Human) 
2026-09-14 | PXD075344 | Pride
Crystal  mass spectrometry  nephrolithiasis  proteome  stone modulators  urinary proteins 
ProteomicsProteomic analysis of urinary exosomes in cystinuria patients
Cystinuria is a rare renal genetic disease caused by mutations in cystine transporter genes and characterized by defective cystine reabsorption leading to kidney stones. In 14% of cases patients undergo nephrectomy, but given the difficulty to predict the evolution of the disease, the identification...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-03-01 | MSV000079546 | MassIVE
GenomicAssessment of Health-related Quality of Life in Rare Kidney Stones

The purpose of this study is to learn about Health-related Quality Of Life (HRQoL) in patients enrolled in the Rare Kidney Stone Consortium (RKSC) registries. Quality of life studies look at different aspects of both physical and mental components of people's lives. HRQoL data for people affe...

phs001770 | dbGaP
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