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GenomicsGenome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with rice centromeres
Specification and propagation of the centromeres of eukaryotic chromosomes is determined by epigenetic mechanisms. Unfortunately, the epigenetic characteristics of centromeric DNA and chromatin are difficult to define because the centromeres are composed of highly repetitive DNA sequences in most eu...
ORGANISM(S): Oryza sativa 
2010-04-22 | E-GEOD-21414 | biostudies-arrayexpress
TranscriptomicsGene expression of the colonic epithelial cells in CRB mice fed with HFD and LFD
To elucidate the mechamisms of colonic Treg cell induction by microbial metabolite(s), chroloform-resistant bacteria (CRB)-associated mice was developed and given low-fiber diet (LFD) and high-fiber diet (HFD). The colonic epithelial cells were isolated and gene expression profiles were analyzed by ...
ORGANISM(S): Mus musculus 
2014-08-11 | E-GEOD-41104 | biostudies-arrayexpress
TranscriptomicsComparative transcriptomic analysis of BA- or BL-
This SuperSeries is composed of the following subset Series: GSE12997: Comparative transcriptomic analysis of BA- or BL- associated murine colonic epithelium GSE12998: Comparative transcriptomic analysis of BA- or BL- associated murine colonic epithelium after O157 infection Refer to individual Seri...
ORGANISM(S): Mus musculus 
2011-01-27 | E-GEOD-13061 | biostudies-arrayexpress
TranscriptomicsComparative transcriptomic analysis of BA- or BL- associated murine colonic epithelium
A huge number of microorganisms are colonized in human gut and the balance of their composition is closely related to human health. Recently, many probiotics such as bifidobacteria or lactobacilli have been introduced in our life as effective agents. However, we have not well understood their benefi...
ORGANISM(S): Mus musculus 
2011-01-27 | E-GEOD-12997 | biostudies-arrayexpress
TranscriptomicsComparative transcriptomic analysis of BA- or BL- associated murine colonic epithelium after O157 infection
A huge number of microorganisms are colonized in human gut and the balance of their composition is closely related to human health. Recently, many probiotics such as bifidobacteria or lactobacilli have been introduced in our life as effective agents. However, we have not well understood their benefi...
ORGANISM(S): Mus musculus 
2011-01-27 | E-GEOD-12998 | biostudies-arrayexpress
TranscriptomicsA novel metabolic monitoring system identified nutrition-mediated microbial interactions
"Omics" technologies have been developed to understand the whole complex microbial systems; however, most omics studies reported so far were utilized to analyze the living matters of “single-species”. To understand the cell-cell interaction in the gut microbial complex, we selected to exam...
ORGANISM(S): Escherichia coli 
2011-09-30 | E-GEOD-18474 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse testis from Tslc1-/- knockouts
TSLC1/IGSF4, an immunoglobulin superfamily molecule, is predominantly expressed in the brain, lung, and testis and plays important roles in epithelial cell adhesion, cancer invasion, and synapse formation. We generated Tslc1/Igsf4-deficient mice by disrupting exon 1 of the gene and found that Tslc1...
ORGANISM(S): Mus musculus 
2008-06-12 | E-GEOD-3676 | biostudies-arrayexpress
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