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ProteomicsCombining high resolution and exact calibration to boost statistical power: A well-calibrated score function for high-resolution MS2
This project reanalzyes data from 4 other projects. Information about the samples can be found in the following four publications. The four samples used in this study include a ocean metaproteome sample, a human sample, a E. coli sample, and a Plamodium falciparum sample. B. N. Pease, E. L. Huttli...
ORGANISM(S): Homo sapiens (Human) Plasmodium falciparum (isolate 3D7) Escherichia coli 
2018-09-19 | PXD009265 | Pride
E. coli Score function Ocean Human Plasmodium 
Metabolomicsmetabolomics Analysis in Cecal Samples
Targeted LC/MS Metabolomics. Cecal contents were lyophilized overnight and approximately 2.5-5 mg was homogenized in 250 µL of 50% acidified acetonitrile (0.3% formic acid) for targeted LC/MS/MS metabolomics (acylcarnitines, amino acids, organic acids, nucleotides, and CoAs) according to validated, ...
2026-06-19 | MTBLS14783 | MetaboLights
ModelsMullinax2016 - Mathematical model of tumor-immune cell interactions to optimize the meta-phenotype of TIL subpopulations
This model is described in the publication: John Mullinax, Cliona O’Farrelly, Jacob G. Scott, Andreas Buttenschön, Asmaa E. Elkenawi, Fadoua El Moustaid, Alexander G. Fletcher, Clemens Grassberger, Eunjung Kim, Andriy Marusyk, Harry L.O. McClelland, Daria Miroshnychenko, Daniel Nichol. "Harnessing t...
2021-09-11 | MODEL2109110006 | BioModels
UnknownMacrotermycins A-D, Glycosylated Macrolactams from a Termite-Associated Amycolatopsis sp. M39.
Not available
S-EPMC6006516 | biostudies-literature
UnknownIdentification of Anti-Inflammatory Compounds from Hawaiian Noni (Morinda citrifolia L.) Fruit Juice.
Not available
S-EPMC7662328 | biostudies-literature
UnknownBEST: A Randomized Phase II Study of Vascular Endothelial Growth Factor, RAF Kinase, and Mammalian Target of Rapamycin Combination Targeted Therapy With Bevacizumab, Sorafenib, and Temsirolimus in Advanced Renal Cell Carcinoma--A Trial of the ECOG-ACRIN Cancer Research Group (E2804).
Not available
S-EPMC4500832 | biostudies-literature
TranscriptomicsAbiraterone acetate and di-n-butyl phthalate (DBP) response in a human fetal testis xenograft bioassay
The goal of this study was to determine the effects of a well-characterized anti-androgen, abiraterone acetate, and a suspected human anti-androgen, di-n-butyl phthalate (DBP) on the androgenic function of human fetal testis. Human fetal testis was xenografted into the renal subcapsular space of cas...
ORGANISM(S): Homo sapiens 
2013-10-31 | E-GEOD-49244 | biostudies-arrayexpress
ProteomicsSupporting MS data for paper (doi:10.1038/s41565-025-02080-2) by Goerzen, D. et al (2025), titled "Machine perception liquid biopsy identifies brain tumours via systemic immune and tumour microenvironment signature"
Supporting MS data for paper (doi:10.1038/s41565-025-02080-2) by Goerzen, D. et al (2025), titled "Machine perception liquid biopsy identifies brain tumors via systemic immune and tumor microenvironment signature." The index of experiments, related MS files, and labels is provided in the uploaded Ex...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-10-13 | MSV000099468 | MassIVE
TranscriptomicsA dysregulated Acetyl/SUMO switch of FXR promotes hepatic inflammation in obesity
Acetylation of transcriptional regulators is normally dynamically regulated by nutrient status but is often persistently elevated in nutrient-excessive obesity conditions. We investigated the functional consequences of such aberrantly elevated acetylation of the nuclear receptor FXR as a model. Prot...
ORGANISM(S): Mus musculus 
2014-10-17 | E-GEOD-62414 | biostudies-arrayexpress
TranscriptomicsCYP19A1 mediated sex hormone metabolism promotes severe disease outcome in SARS-CoV-2 infected male golden hamsters
Male sex belongs to one of the risk factors for severe COVID-19 outcome. However, underlying mechanisms that could affect sex dependent disease outcome are yet unknown. Here, we identified the CYP19A1 gene encoding for the testosterone-to-estradiol metabolizing enzyme CYP19A1 (alias aromatase) as a ...
ORGANISM(S): Mesocricetus auratus 
2022-01-21 | E-MTAB-11162 | biostudies-arrayexpress
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