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ProteomicsTotal and synaptosomal proteomic analysis
Autism spectrum disorders (ASD) represent neurodevelopmental disorders characterized by social deficits, repetitive behaviors, and various comorbidities, including epilepsy. ANK2, which encodes a neuronal scaffolding protein, is frequently mutated in ASD, but its in vivo functions and disease-relate...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2023-03-19 | MSV000091510 | MassIVE
TranscriptomicsRNAseq analyses of pathogenic Burkholderia glumae under in vitro and in vivo conditions
We analyzed B. glumae transcriptome from infected rice tissue using an RNAseq technique. To identify unique expression of B. glumae genes within rice tissues, we compared in vivo transcriptome data of B. glumae to in vitro data. To accomplish this, we analyzed differentially expressed genes (DEGs) a...
ORGANISM(S): Burkholderia glumae BGR1 
2014-08-21 | E-GEOD-56958 | biostudies-arrayexpress
UnknownSimultaneous Expression of Long Non-Coding RNA FAL1 and Extracellular Matrix Protein 1 Defines Tumour Behaviour in Young Patients with Papillary Thyroid Cancer.
Not available
S-EPMC8268647 | biostudies-literature
ProteomicsIntegrative multi-scale physiological, metabolic, and proteomic reprogramming in tomato under polyethylene microplastic stress
This dataset contains bottom-up, label-free proteomic data from tomato roots exposed to polyethylene microplastics under soil conditions. Tomato plants (Solanum lycopersicum cv. Super Dotaerang) were grown for 48 days in agricultural soil containing 0%, 1%, or 5% (w/w) polyethylene microplastics. Ro...
ORGANISM(S): root Solanum lycopersicum 
2026-10-20 | PXD076181 | Pride
Tomato  solanum lycopersicum  root proteomics  polyethylene microplastics  label-free quantification  abiotic stress  dda  bottom-up proteomics 
TranscriptomicsAdaptive evolution of Corynebacterium glutamicum resistant to oxidative stress and its global gene expression profiling
Corynebacterium glutamicum was adapted in a chemostat for 1,900 h with gradually increasing H2O2 stress to understand the oxidative stress response of an industrial host. After 411 generations of adaptation, C. glutamicum developed the ability to grow under stress of 10 mM H2O2, whereas the wild-typ...
ORGANISM(S): Corynebacterium glutamicum ATCC 13032 
2013-01-06 | E-GEOD-41232 | biostudies-arrayexpress
UnknownDevelopment and clinical validation of CT-based regional modified Centiloid method for amyloid PET.
Not available
S-EPMC9585745 | biostudies-literature
UnknownSurvival outcomes of young-age female patients with early breast cancer: an international multicenter cohort study.
Not available
S-EPMC11530587 | biostudies-literature
ProteomicsViral hijacking of the TENT4-ZCCHC14 complex protects viral RNAs via mixed tailing
TENT4 enzymes generate “mixed tails” on mRNAs by adding adenosines with intermittent non-adenosine residues, which protect mRNAs from deadenylation. Here we discover the extensive mixed tailing in the transcripts of two distinct DNA viruses, hepatitis B virus (HBV) and human cytomegalovirus (HCMV), ...
ORGANISM(S): Homo sapiens (Human) 
2020-04-27 | PXD018061 | Pride
Rna modification Viral rna Rna-protein interaction 
TranscriptomicsRNA-Seq analysis of quorum sensing-dependent genes in Burkholderia glumae BGR1
Burkholderia glumae causes rice grain rot and sheath rot by producing toxoflavin, whose expression is regulated by quorum sensing (QS). The QS systems of the bacterium rely on N-octanoyl homoserine lactone, synthesized by TofI and its cognate receptor TofR, to activate toxoflavin biosynthesis genes ...
ORGANISM(S): Burkholderia glumae 
2012-03-14 | E-GEOD-36485 | biostudies-arrayexpress
UnknownThe Arabidopsis sn-1-specific mitochondrial acylhydrolase AtDLAH is positively correlated with seed viability.
Not available
S-EPMC3223057 | biostudies-literature
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