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TranscriptomicsTranscription profiling of Arabidopsis roots from wild type and stop1 mutant plants treated with Al or low pH
Comparison of stop1 mutant vs. wild type treated with Al or low pH, and gene expression responses to rhizotoxic ions (Al, low pH) in Arabidopsis roots.
ORGANISM(S): Arabidopsis thaliana 
2009-05-04 | E-MEXP-1908 | biostudies-arrayexpress
TranscriptomicsSTOP2 activated transcription in the stop1-mutant: STOP2-complemented lines (stop1-mutant with transformed STOP2) vs. stop1-mutant of Arabidopsis
Transcriptional profiling of genes recoverd by STOP2-complementation in the stop1-mutant (STOP2 expression is repressed in the stop1-mutant). The roots were exposed to Al and low pH stressed conditions, then genes recovered expression were analyzed. Goal is identifying the genes can be actevated the...
ORGANISM(S): Arabidopsis thaliana 
2013-10-21 | E-GEOD-45017 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis roots after treatment with rhizotoxic ions Al, Cu, Cd and NaCl
Comparison of gene expression responses to rhizotoxic ions (Al, Cu, Cd and NaCl) in Arabidopsis roots.
ORGANISM(S): Arabidopsis thaliana 
2009-05-04 | E-MEXP-1907 | biostudies-arrayexpress
ProteomicsTMT-based quantitative proteomics in Rab35 cKO P0 hippocampus
The hippocampi from the control (Rab35flox/+; Nestin-Cre) and Rab35 cKO mice groups at P0 (n = 5 biological replicates per genotype) were lysed in a buffer containing 6 M guanidine hydrochloride, 100 mM HEPES-NaOH (pH 8.0), 10 mM TCEP, and 40 mM chloroacetamide. The lysates were dissolved through he...
ORGANISM(S): Mus Musculus (mouse) 
2023-04-07 | PXD041290 | JPOST Repository
TranscriptomicsExpression data of HUVEC cells after TNF-alpha treatment
Tumor necrosis factor a (TNF-aplha) is a potent cytokine that orchestrates the inflammatory response by sequentially activating the expression of many genes in cultured human umbilical vein cells (HUVECs). We apply samples collected every 7.5 min to arrays and monitor the growth of several long tran...
ORGANISM(S): Homo sapiens 
2007-09-19 | E-GEOD-9036 | biostudies-arrayexpress
TranscriptomicsPrognostic significance of overexpression of Traf2- and Nck- interacting kinase (TNIK) in colorectal cancer [gene expression]
Introduction: The potential of expression profiling using microarray analysis as a tool to predict the prognosis for different types of cancer has been realized. This study aimed to identify a novel biomarker for colorectal cancer (CRC). Experimental design: The expression profiles of cancer cells ...
ORGANISM(S): Homo sapiens 
2015-11-21 | E-GEOD-64256 | biostudies-arrayexpress
TranscriptomicsPrognostic significance of overexpression of Traf2- and Nck- interacting kinase (TNIK) in colorectal cancer [copy number analysis]
Introduction: The potential of expression profiling using microarray analysis as a tool to predict the prognosis for different types of cancer has been realized. This study aimed to identify a novel biomarker for colorectal cancer (CRC). Experimental design: The expression profiles of cancer cells ...
ORGANISM(S): Homo sapiens 
2015-11-21 | E-GEOD-64257 | biostudies-arrayexpress
TranscriptomicsVuDREB2A activated transcription in wild type Arabidopsis: VuDREB2A overexpressor lines vs. wild type Arabidopsis
Transcriptional profiling of Arabidopsis overexpressing VuDREB2A (full length/truncated) compared to wild type. Unstressed three week-old whole seedlings were used. Goal was to search the genes upregulated byVuDREB2A in Arabidopsis. Two-condition experiment, VuDREB2A (full length/truncated) overexpr...
ORGANISM(S): Arabidopsis thaliana 
2013-12-10 | E-GEOD-53113 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana Col-0 Al stress 6hrs
Transcriptional profiling of roots in Arabidopsis Col-0 with 10 M-BM-5M AlCl3 6hrs vs w/o AlCl3 6hrs 10 M-BM-5M AlCl3 pH5.0 6hrs vs. noAlCl3 pH5.0 6hrs
ORGANISM(S): Arabidopsis thaliana 
2014-10-11 | E-GEOD-62238 | biostudies-arrayexpress
TranscriptomicsBiallelic and complicated inactivation of Pten in radiation-induced mouse thymic lymphomas
Inactivation of Pten occurs by multiple mechanisms including epigenetic silencing, point mutations, insertion, and deletion, which are tissue dependent. Although frequent loss of heterozygosity around Pten locus and plausible involvement of epigenetic silencing have been reported in radiation-induce...
ORGANISM(S): Mus musculus 
2010-05-06 | E-GEOD-17751 | biostudies-arrayexpress
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