Kuo P P - OmicsDI

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Unknown (2093)
Transcriptomics (120)
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Homo sapiens (87)
Mus musculus (35)
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288671 (1)
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Organisms

Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (124)
pride (18)
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Instrument Platform

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CHEBI ID

CHEBI:16449 (4)
CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:15741 (3)
CHEBI:17724 (3)
CHEBI:18186 (3)
CHEBI:30769 (3)
CHEBI:32816 (3)
CHEBI:78320 (3)
CHEBI:15318 (2)
CHEBI:15428 (2)
CHEBI:15756 (2)
CHEBI:15891 (2)
CHEBI:16264 (2)
CHEBI:16335 (2)
CHEBI:16708 (2)
CHEBI:16811 (2)
CHEBI:17126 (2)
CHEBI:17234 (2)
CHEBI:17287 (2)
CHEBI:17368 (2)
CHEBI:17553 (2)
CHEBI:17659 (2)
CHEBI:17748 (2)
CHEBI:17822 (2)
CHEBI:18050 (2)
CHEBI:18132 (2)
CHEBI:18211 (2)
CHEBI:24898 (2)
CHEBI:26271 (2)

Metabolite Name

Alanine (4)
Tyrosine (4)
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1,2,4-triazines (1)
1,4-benzodiazepines (1)
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1-hydroxy-2-unsubstituted benzenoids (1)
1-hydroxy-4-unsubstituted benzenoids (1)
2'-deoxyadenosine 5'-monophosphate (1)
2'-deoxycytidine (1)
2'-deoxycytosine 5'-monophosphate (1)
2'-deoxyguanosine (1)

IsPrivate

False (2)

Submitter Keywords

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FAIR-AIML (1)

First Public Date

2019 (1)
2014 (1)

Modelling Approach

Computational model (1)
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Study type

Transcription profiling by array (87)
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Release Date

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2007 (5)
2006 (4)
2005 (3)
2004 (3)
2001 (2)
1998 (2)
2003 (1)
1999 (1)

Lab affiliation

Jiangsu Academy of Agricultural Sciences (2)
Cell and Chemical Biology Leiden University Medical Center The Netherlands (1)
Department of Biomedical Science and Environmental Biology, College of Life Science, Kaohsiung Medical University (1)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, United States. (1)
Departments of Medicine (Oncology) and of Chemical and Systems Biology, Stanford School of Medicine, Stanford, CA, USA Stanford Cancer Institute, Stanford, CA, USA (1)
Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University The Netherlands (1)
Graduate Institute of pathology and Parasitology. National Defense Medical Center, Taipei, Taiwan (1)
Insitute for Cardiovascular Physiology, Goethe University, Frankfurt, Germany (1)
Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (1)
Institute of Chemistry, Academia Sinica, Taiwan (1)
Prof. Dr. Oliver Schilling Heisenberg Professor of Translational Proteomics Institute of Surgical Pathology Faculty of Medicine University of Freiburg Breisacher Strasse 115a D-79106 Freiburg, Germany +49 761 27080610 oliver.schilling@mol-med.uni-freiburg.de (1)
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
Spanish National Cancer Research Centre (CNIO) Address: Melchor Férnandez Almagro, 3. 28029 Madrid. SPAIN Phone: +34 917 328 000 Ext. 3110 (1)
Systems Immunology Department, The Merbl Lab, Weizmann Institute of Science, Israel (1)
Translational Genomics Research Institute (1)
Translational Genomics Research Institute (TGen) (1)

Tags

xref:PubMed:28548038 (1)
xref:PubMed:17679090 (1)

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High-frequency versus theta burst transcranial magnetic stimulation for the treatment of poststroke cognitive impairment in humans

Not available

S-EPMC7828923 | biostudies-literature

Long-term dynamics of bone mineral density during intermittent androgen deprivation for men with nonmetastatic, hormone-sensitive prostate cancer.

Not available

S-EPMC3383183 | biostudies-literature

Pinostrobin and Tectochrysin Conquer Multidrug-Resistant Cancer Cells via Inhibiting P-Glycoprotein ATPase.

Not available

S-EPMC9963356 | biostudies-literature

Azido-[1,2-bis-(diphenyl-phosphan-yl)ethane-κP,P'](η-inden-yl)ruthenium(II).

Not available

S-EPMC3050413 | biostudies-literature

Identifying crossover locations in Arabidopsis thaliana h2a.w7 Col-0 × Ler F2 populations using genotyping-by-sequencing

Genomic DNA from 144 h2a.w7 Col-0 x Ler F2 individuals was extracted using CTAB (as described in Kuo et al, 2022 Methods Mol Biol - PMID: 35461443) and used to generate sequencing libraries as described (Lawrence et al, 2019 Current Biology - PMID: 31378616). Sequencing data was analysed to identify...

ORGANISM(S): Arabidopsis thaliana

2025-07-11 | E-MTAB-15040 | biostudies-arrayexpress

Nicotine effect on CEM model T cell line (kuo-affy-human-232861)

The long-term objective of this project is to establish roles played in development and function of the immune system by nicotinic acetylcholine receptors (nAChR) and exposure to the tobacco alkaloid, nicotine. The planned gene chip studies will allow us to assess effects of nicotine exposure on ge...

ORGANISM(S): Homo sapiens

2008-04-11 | E-GEOD-11142 | biostudies-arrayexpress

Comparative exo-proteomic analysis of Trichoderma antagonists induced by oomycete mycelium highlights diverse antagonism strategies

Plant-beneficial fungi from the genus Trichoderma (Hypocreales, Ascomycota) can control oomyceteous plant-pathogenic Pythium myriotylum (Peronosporales, Oomycota) and thus serve as bioeffectors for the eco-friendly products of crop protection. However, the underlying mechanisms of microbe-microbe in...

ORGANISM(S): Trichoderma asperellum CBS 433.97 Trichoderma virens Gv29-8 Hypocrea jecorina (strain QM6a) (Trichoderma reesei) Trichoderma atroviride IMI 206040 Trichoderma parepimyces Trichoderma guizhouense

2024-07-19 | PXD051895 | Pride

Functional Roles of Metabolic Intermediates in Regulating the Human Mitochondrial NAD(P)⁺-Dependent Malic Enzyme.

Not available

S-EPMC6591397 | biostudies-literature

Differential regulation of SBF and MBF target genes by genotoxic stress occurs via Rad53-dependent inactivation of the MBF correpressor Nrm1

MBF and SBF transcription factors regulate a large family of coordinately expressed G1/S genes required for early cell cycle functions including DNA replication and repair. SBF is inactivated upon S phase entry by Clb/CDK whereas MBF targets are repressed by the corepressor, Nrm1. Using genome-wide ...

ORGANISM(S): Saccharomyces cerevisiae

2012-02-15 | E-GEOD-33695 | biostudies-arrayexpress

Pulmonary gene and microRNA expression changes in mice exposed to benzo(a)pyrene by oral gavage

Polycyclic aromatic hydrocarbons (PAHs) are widely distributed, carcinogenic environmental contaminants produced as a consequence of the incomplete combustion of fossil fuels. Benzo[a]pyrene (BaP) is a very extensively studied prototypical PAH. We recently reported a complete lack of change in micro...

ORGANISM(S): Mus musculus

2011-10-03 | E-GEOD-24751 | biostudies-arrayexpress

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