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ProteomicsComparison of Lung Cancer Proteome Profiles 1: Label Free Quantification
The goal of this project is to compare label free quantification, chemical labeling with tandem mass tags, and data independent acquisition discovery proteomics approaches using lung squamous cell carcinomas and adjacent lung tissues.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-27 | MSV000080685 | MassIVE
ProteomicsComparison of DIA and TMT based protein quantification in complex background
Label free quantification (LFQ) and isobaric labelling quantification (ILQ) are among the most popular protein quantification workflows in discovery proteomics. Here, we compared the TMT 10-plex workflow to label free single shot data-independent acquisition (DIA) method on a controlled sample set. ...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-01-29 | MSV000084859 | MassIVE
UnknownSynchroSep-MS: Parallel LC Separations for Multiplexed Proteomics.
Not available
S-EPMC12331150 | biostudies-literature
ProteomicsLabel-Free Single Cell Proteomics Utilizing Ultrafast LC and MS Instrumentation: A Valuable Complementary Technique to Multiplexing.
In recent years, single cell proteomics became one of the hottest topics within the field of proteomics. The potential ability to map the proteomic fingerprint to transcriptomic data would master the understanding of how gene expression translates into actual phenotypes and cellular functions. In co...
ORGANISM(S): Homo sapiens (Human) 
2023-02-09 | PXD039208 | Pride
Dia Label-free-proteomics Data-completness Dda 
UnknownA High-Sensitivity Low-Nanoflow LC-MS Configuration for High-Throughput Sample-Limited Proteomics.
Not available
S-EPMC10753523 | biostudies-literature
UnknownIdentification of Azoxystrobin Glutathione Conjugate Metabolites in Maize Roots by LC-MS.
Not available
S-EPMC6651014 | biostudies-literature
UnknownAbsolute and relative quantitation of amylase/trypsin-inhibitors by LC-MS/MS from wheat lines obtained by CRISPR-Cas9 and RNAi.
Not available
S-EPMC9465248 | biostudies-literature
UnknownAchieving quantitative reproducibility in label-free multisite DIA experiments through multirun alignment.
Not available
S-EPMC10616189 | biostudies-literature
ProteomicsComparison of Lung Cancer Proteome Profiles 4: DDA
The goal of this project is to compare label free quantification, chemical labeling with tandem mass tags, and data independent acquisition discovery proteomics approaches using lung squamous cell carcinomas and adjacent lung tissues. This additional single sample LC-MS/MS analysis with data depend...
ORGANISM(S): Homo sapiens (Human) 
2017-02-16 | PXD005733 | Pride
Data dependent acquisition Lung cancer Discovery proteomics Lc-ms/ms Single sample analysis 
ProteomicsQuantification of ATIs in Wheat by LC-MS/MS – LFQ DIA QTOF
A selection of ATIs was silenced in the common wheat cultivar Bobwhite and durum wheat cultivar Svevo by RNAi and gene editing, respectively, in order to reduce the amounts of ATIs. The controls and silenced lines were analyzed after digestion to peptides by LC-MS/MS with different approaches to eva...
ORGANISM(S): Triticum aestivum (Wheat) 
2022-10-13 | PXD034509 | Pride
Amylase/trypsin inhibitor  wheat  crsipr-cas9  rnai 
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