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ProteomicsA label-free shotgun proteomics analysis of macadamia nut
In this study, we present a first proteomic overview of macadamia nut using a label-free shotgun proteomic approach and prediction of their proteins with potential allergenic activity and cross-reactivity via an in silico analysis. The defense response proteins were the most abundant group of protei...
ORGANISM(S): Macadamia 
2020-01-13 | PXD015364 | Pride
Macadamia nut  label-free shotgun proteomics  in silico analysis  allergenicity  cross-reactivity 
ProteomicsRobust collection and processing for label-free single voxel proteomics
With advanced mass spectrometry (MS)-based proteomics, genome-scale proteome coverage can be achieved from bulk tissues. However, such bulk measurement lacks spatial resolution and obscures important tissue heterogeneity, which make it impossible for proteome mapping of tissue microenvironment. Here...
ORGANISM(S): Homo Sapiens (human) 
2024-11-01 | PXD045043 | JPOST Repository
ProteomicsIntensity-based label-free proteomics using a quadrupole orbitrap mass spectrometer
We present a unique data set for benchmarking label free quantitative proteomics using a quadrupole orbitrap mass spectrometer. Soluble Escherichia coli digest was spiked into a HeLa digest in four different concentrations, simulating protein expression differences. The data set, which is available ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2015-03-25 | PXD001385 | Pride
Q exactive Quadrupole orbitrap Proteomics Label-free 
UnknownMetaprotein expression modeling for label-free quantitative proteomics.
Not available
S-EPMC3436780 | biostudies-literature
ProteomicsLabel-free quantification in ion-mobility enhanced data-independent acquisition proteomics
Data-dependent acquisition (DDA) methods are a well-established tool for proteome analysis and have greatly expedited the field of shotgun proteomics. However, their serial and stochastic nature restricts their reproducibility and limits the detectable dynamic range to the peptides that ionize best....
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (Baker's yeast) Escherichia coli 
2016-03-29 | PXD002393 | Pride
Proteomics Mass spectrometry Label-free quantification Ion mobility separation Data-independent acquisition 
UnknownGeneralized Linear and Mixed Models for Label-Free Shotgun Proteomics.
Not available
S-EPMC3399744 | biostudies-literature
ProteomicsLabel-Free Single Cell Proteomics Utilizing Ultrafast LC and MS Instrumentation: A Valuable Complementary Technique to Multiplexing.
In recent years, single cell proteomics became one of the hottest topics within the field of proteomics. The potential ability to map the proteomic fingerprint to transcriptomic data would master the understanding of how gene expression translates into actual phenotypes and cellular functions. In co...
ORGANISM(S): Homo sapiens (Human) 
2023-02-09 | PXD039208 | Pride
Dia Label-free-proteomics Data-completness Dda 
UnknowniTRAQ-Based and Label-Free Proteomics Approaches for Studies of Human Adenovirus Infections.
Not available
S-EPMC3608280 | biostudies-literature
ProteomicsBlack pepper proteome - Transcriptome- Assisted Label-Free Quantitative Proteomics Analysis Reveals Novel Insights into Piper nigrum-Phytophthora capsici Phytopathosystem
In this study, we have evaluated the proteomic changes that occur in Piper nigrum L.(black pepper) after infection by the pathogen Phytophthora capsici. We report novel leaf proteins from black pepper identified by an integrated transcriptome-assisted label-free quantitative proteomics pipeline. Sev...
ORGANISM(S): Piper nigrum 
2016-07-07 | PXD003887 | Pride
Plgs Label-free quantitative proteomics Piper nigrum 
Proteomicslabel-free quantitative proteomics analysis proteins in the intestinal tissue of Haemaphysalis qinghaiensis
De novo assembled transcriptomics-assisted label-free quantitative proteomics analysis reveals sex-specific proteins in the intestinal tissue of Haemaphysalis qinghaiensis
ORGANISM(S): Haemaphysalis Sp. Cj-2015 
2021-10-14 | PXD029123 |
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