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ProteomicsXylose Metabolism and the Effect of Oxidative Stress on Lipid and Carotenoid Production in Rhodotorula toruloides: Insights for Future Biorefinery
The use of cell factories to convert sugars from lignocellulosic biomass into chemicals in which oleochemicals and food additives, such as carotenoids, play an important role is essential for the shift towards sustainable processes. Rhodotorula toruloides is a yeast that naturally metabolises a wide...
ORGANISM(S): Rhodotorula toruloides 
2020-07-29 | PXD019305 | Pride
Absolute proteomics Genome-scale modelling Microbial oil Rhodotorula toruloides Biorefinery Xylose Carotenoids 
ProteomicsAbsolute quantification of yeast proteome
Protein synthesis is the most energy consuming process in a proliferating cell, and understanding what controls protein abundances and how this impacts changes in metabolic fluxes is a key question in biology. We quantified mRNA and protein levels in Saccharomyces cerevisiae under ten environmental ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-03-07 | PXD005041 | Pride
Osmolarity Chemostats Temperature Stress response Ethanol Protein turnover Integrative data analysis Saccaromyces cerevisiae Absolute quantification 
ProteomicsGenome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloides
Rhodotorula toruloides is a non-conventional, oleaginous yeast able to naturally accumulate high amounts of microbial lipids. Constraint-based modeling of R. toruloides has been mainly focused on the comparison of experimentally measured and model predicted growth rates, while the analysis of intrac...
ORGANISM(S): Rhodotorula toruloides 
2023-03-13 | PXD037281 | Pride
Proteomics Rhodotorula toruloides Metabolic fluxes Multiple substrates Genome-scale model 
ProteomicsMass Spectrometry Proteomics of Engineered Yarrowia lipolytica Strains for Enhanced Carotenoid and Lipid Production Across Two Growth Phases.
This submission contains the mass spectrometry proteomics dataset collected from the oleaginous yeast Yarrowia lipolytica. The data was collected from three strains grown in glycerol mineral medium: a parental control strain (PAR), a genetically modified carotenoid-producing strain (CAR), and a gene...
ORGANISM(S): Yarrowia lipolytica (Candida lipolytica) 
2026-03-30 | PXD072100 | Pride
Glycerol 
ProteomicsL.lactis - Whole organism, SC (Lahtvee,microbiology,2014)
abundance based on Spectral counting, Interaction consistency score: 11.2, Coverage: 49
ORGANISM(S): 272623 
2014-00-00 | 3365734308 | PAXDB
TranscriptomicsSpecific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures
Specific growth rate dependent gene expression changes of Escherichia coli K12 MG1655 were determined by microarray and real time PCR analyses. The bacteria were cultivated on glucose limited minimal medium using the accelerostat method (A-stat), where starting from steady state conditions in a chem...
ORGANISM(S): Escherichia coli 
2010-05-22 | E-GEOD-18183 | biostudies-arrayexpress
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