Xylose - OmicsDI

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CHEBI ID

CHEBI:15428 (71)
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CHEBI:17268 (52)
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CHEBI:16704 (49)

Metabolite Name

Xylose (58)
Xylose (50)
Glucose (48)
Glycine (47)
Proline (46)
Alanine (46)
Myo-inositol (46)
Serine (45)
Phenylalanine (45)
Tyrosine (45)
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Valine (45)
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Fructose (44)
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Malic acid (42)
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Mannose (39)
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Beta-alanine (39)

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Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (4)
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1 School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia. 2 Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia (1)
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Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic ORCID logohttp://orcid.org/0000-0001-6976-8446 (1)
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Leibniz Institute for Natural Product Research and Infection Biology - Hans Knoell Institute Jena Department of Molecular and Applied Microbiology Subgroup Stress- and Immunoproteomics (1)
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MPI for Marine Microbiology Celsiusstr. 1 D-28359 Bremen Germany (1)
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Keyword

Fructose (1)
D-Xylose (1)
Primary Human Colorectal Tumors (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (5)

Classification

fungi (120)
bacteria (38)

Modification

15.994915 (1)
57.021464 (1)

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Transcription profiling by array (120)
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Transcription profiling of S. cerevisiae xylose metabolism mutants grown on glucose and xylose under aerobic and anaerobic conditions

Response of Saccharomyces cerevisiae engineered for xylose metabolism to changes in carbon source and aeration

ORGANISM(S): Saccharomyces cerevisiae

2007-07-07 | E-GEOD-835 | biostudies-arrayexpress

Transcription profiling Saccharomyces cerevisiae xylose metabolism

In the present study transcriptome and proteome of recombinant, xylose-utilising S. cerevisiae grown in aerobic batch cultures on xylose were compared with glucose-grown cells both in glucose repressed and derepressed states. The aim was to study at genome-wide level how signalling and carbon catabo...

ORGANISM(S): Saccharomyces cerevisiae

2008-10-26 | E-GEOD-12890 | biostudies-arrayexpress

Time course transcriptome of Lactobacillus oligofermentans LMG 22743 during the growth on glucose, ribose and xylose

L. oligofermentans was grown microaerobically on modified (without malic acid, cellulose and bromocresol green) MLD medium (Cavin JF et al., Appl Environ Microbiol 1989), containing either glucose, ribose or xylose as a sole carbon source (50mM) in three replicates. Samples were taken at three time ...

ORGANISM(S): Lactobacillus oligofermentans DSM 15707 = LMG 22743

2016-08-09 | E-MTAB-4107 | biostudies-arrayexpress

Xylose utilization timecourse

We have identified a novel xylose-utilization phenotype controlled by a single gene, and we sought to characterize how both the presence and absence of xylose in the presence or absence of the trait affected the S. cerevisiae transcriptional program over time. To do so, we measured global steady st...

ORGANISM(S): Saccharomyces cerevisiae

2010-04-09 | E-GEOD-19116 | biostudies-arrayexpress

Expression analysis of various fungi grown in glucose or xylose

This SuperSeries is composed of the following subset Series: GSE24853: Expression analysis of Spathaspora passalidarum NRRL Y-27907 grown in glucose or xylose GSE24854: Expression analysis of Pichia stipitis CBS 6054 grown in glucose or xylose GSE24855: Expression analysis of Lodderomyces elongispor...

ORGANISM(S): Candida albicans WO-1

2011-10-19 | E-GEOD-24858 | biostudies-arrayexpress

Deciphering regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa

Hemicellulose, the second most abundant plant biomass fraction after cellulose, is widely viewed as a potential feedstock for the production of liquid fuels and other value-added materials. Degradation of hemicellulose by filamentous fungi requires production of many different enzymes, which are ind...

ORGANISM(S): Neurospora crassa

2012-03-26 | E-GEOD-34098 | biostudies-arrayexpress

Transcriptome analysis of xylose metabolism in the methylotrophic yeast Hansenula polymopha

The transcriptomes of H. polymorpha grown on xylose were compared with those of glucose-grown cells under both aerobic and microaerobic conditions The transcriptomes of H. polymorpha grown on xylose were compared with those of glucose-grown cells under both aerobic and microaerobic conditions

ORGANISM(S): Ogataea angusta

2016-07-03 | E-GEOD-43240 | biostudies-arrayexpress

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

Our study is the first investigation of proteome of oleaginous yeast Rhotodorula toruloides during conversion of xylose into lipids. We performed comparative proteomics of R. toruloides during cultivation of two carbon sources: glucose and xylose. Proteome analysis revealed significantly lower level...

ORGANISM(S): Rhodotorula toruloides

2019-08-08 | PXD012332 | Pride

Aspergillus nidulans : Wild type Fructose x Xylose

Transcriptional profiling of A. nidulans comparing Xylose and Fructose grown on Wild type strain. The main objective was to identifiy genes related to Xylose transport. The experiment was further validated by real-time PCR. Three-condition experiment : A. nidulans strains grown during 16 h on fructo...

ORGANISM(S): Aspergillus nidulans FGSC A4

2013-08-31 | E-GEOD-50485 | biostudies-arrayexpress

Saccharomyces cerevisiae stress responses to HMF and furfural (xylose and glucose) Oct

HMF and furfural were pulse added to xylose-utilizing Saccharomyces cerevisiae during either the glucose consumption phase or the xylose consumption phase. Transcriptome samples were collected before and one hour after pulsing of inhibitors. Three biological replicates from each conditions analyzed.

ORGANISM(S): Saccharomyces cerevisiae

2013-11-25 | E-GEOD-50182 | biostudies-arrayexpress

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