Lane Thomas T - OmicsDI

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Unknown (421)
Transcriptomics (17)
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Homo sapiens (13)
Mus musculus (5)
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biostudies-arrayexpress (19)
pride (15)
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Technology Type

Mass Spectrometry (15)
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Instrument Platform

Illumina HiSeq 2000 (4)
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STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
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Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
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Publication Date

2016 (5)
2013 (5)
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2024 (2)
2020 (2)
2015 (1)
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2011 (1)
2023 (1)

CHEBI ID

CHEBI:15676 (2)
CHEBI:16335 (2)
CHEBI:16708 (2)
CHEBI:16977 (2)
CHEBI:17596 (2)
CHEBI:17750 (2)
CHEBI:18050 (2)
CHEBI:30769 (2)
CHEBI:78320 (2)
CHEBI:10642 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:131187 (1)
CHEBI:132673 (1)
CHEBI:132676 (1)
CHEBI:132957 (1)
CHEBI:133637 (1)
CHEBI:133834 (1)
CHEBI:134270 (1)
CHEBI:134271 (1)
CHEBI:134428 (1)
CHEBI:134451 (1)
CHEBI:136186 (1)
CHEBI:136203 (1)
CHEBI:136236 (1)
CHEBI:136239 (1)
CHEBI:136243 (1)
CHEBI:136256 (1)
CHEBI:136259 (1)
CHEBI:136579 (1)

Metabolite Name

1-monolinolein (1)
11-trans-octadecenoic acid (1)
2,5-dihydroxypyrazine (1)
2-hydroxypyridine (1)
2-linoleoylglycerol (1)
2-palmitoylglycerol (1)
3,4-dihydroxybenzoic acid (1)
3-(3-hydroxyphenyl)propionic acid (1)
3-(4-hydroxyphenyl)propionic acid (1)
3-aminoisobutyric acid (1)
3-deoxyhexonic acid (1)
3-hydroxyisobutyric acid (1)
3-hydroxypyridine (1)
3-methylpiperazine-2,5-dione (1)
4-hydroxybenzoic acid (1)
4-hydroxyphenylacetic acid (1)
5-aminovaleric acid (1)
5-hydroxyindole-3-acetic acid (1)
5-hydroxyvaleric acid (1)
Aglycone (1)
Attenoside (1)
Cer d18:1/16:0 (1)
D-fructose (1)
D-galactonic acid (1)
D-galactose (1)
D-gluconic acid (1)
D-glucose (1)
D-glucose-6-phosphate (1)
D-malic acid (1)
D-mannitol (1)

Study type

RNA-seq of coding RNA (9)
Transcription profiling by array (3)
RNA-seq of coding RNA from single cells (2)
Cell line - High-throughput sequencing (1)
Other (1)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (51)
2021 (47)
2015 (33)
2016 (32)
2012 (31)
2025 (30)
2024 (30)
2023 (29)
2013 (25)
2020 (22)
2019 (21)
2014 (20)
2018 (19)
2011 (14)
2017 (14)
2010 (8)
2009 (6)
2026 (4)
2007 (2)
2006 (1)
2004 (1)

Lab affiliation

Australian Institute of Tropical Health and Medicine. Centre for Molecular Therapeutics. James Cook Univerisity, Cairns. (1)
Cell Pathology Division 816F/ARC Children’s Hospital of Philadelphia The University of Pennsylvania 3615 Civic Center Blvd. 816F/ARC Philadelphia, PA 19104 (1)
Core facility for mass spectrometry and proteomics ZMBH, University Heidelberg Im Neuenheimer Feld 282 69120 Heidelberg Germany (1)
Core facility for mass spectrometry and proteomics, ZMBH, University Heidelberg, Im Neuenheimer Feld 282, 69120 Heidelberg, Germany (1)
Dairy Foods, AgResearch, Ruakura Research Centre (1)
Department of Biochemistry and Molecular Biology, Drexel University College of Medicine. Translational Cellular Oncology Program, Sidney Kimmel Cancer Center, Thomas Jefferson University (1)
Department of Biology University of Rochester Rochester, NY , USA (1)
Department of Neuroscience Center of Translational Research on Neurodegenerative Disesae University of Florida (1)
Giamas Lab School of Life Sciences University of Sussex (1)
ICREA Research Professor, CRG - Centre for Genomic Regulation, Barcelona, Spain. (1)
Institute for Microbiology, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany (1)
Institute of Clinical Pharmacology, Goethe-University, Frankfurt, Germany (1)
Max Planck Institute for Biology of Ageing, Joseph-Stelzmann Strasse 9b, Cologne, 50931, Germany (1)
Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (1)
Professor of Molecular Biology. Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee ,Dundee, DD1 5EH, Scotland, UK (1)

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The NuRD complex is required for Thpok-mediated CD4+ T cell development

This data represent characterization of the interactome of murine Thpok. A version of Thpok (Thpok-Bio) subject to biotinylation in vivo by the BirA biotin ligase was used; to assess Thpok interactions in primary cells, Thpok-Bio was retrovirally expressed in in vitro activated CD4+ T cells from Thp...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

MSV000088126 | MassIVE

Ndfip1 restricts mTORC1 signalling and glycolysis in regulatory T cells to prevent autoinflammatory disease

Project abstract: Foxp3+ T regulatory (Treg) cells have important functions in suppressing immune cell activation and establishing normal immune homeostasis. How Treg cells maintain their identity is not completely understood. Here we show that Ndfip1, a co-activator of Nedd4-family E3 ubiquitin lig...

ORGANISM(S): Mus musculus (Mouse)

2017-04-19 | PXD006251 | Pride