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TranscriptomicsRNA-seq of human cell line HepG2 edited with CRISPR and treated with splice-switching oligo inhibiting a pseudoexon in PCCA against control SSO and control HepG2 cells
Cellular models of propionic acidemia were generated using HepG2 cells that were edited by CRISPR gene editing to introduce the pathogenic PCCA c.1285-1416A>G variant associated with propionic acidemia, and a 7 bp deletion of a predicted hnRNP A1 binding motif (c.1285-1411delTAGAACA), which causes c...
ORGANISM(S): Homo sapiens 
2023-12-10 | E-MTAB-13549 | biostudies-arrayexpress
MetabolomicsGNPS - Fungal secondary metabolite screening in black apples
Dataset containing OSMAC on Penicillium expansum, Monilinia fructigena, Talaromyces minioluteus, Penicillium polonicum cultivated on different media to query against 43 black apple extracts to determine which fungal SMs are present.
ORGANISM(S): Monilinia Fructigena (ncbitaxon:38457) Penicillium Expansum (ncbitaxon:27334) Talaromyces Minioluteus (ncbitaxon:28574) Penicillium Polonicum (ncbitaxon:60169) 
MSV000092823 | GNPS
UnknownStructure-function guided modeling of chemokine-GPCR specificity for the chemokine XCL1 and its receptor XCR1.
Not available
S-EPMC6733756 | biostudies-literature
UnknownUpdate on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes.
Not available
S-EPMC104617 | biostudies-literature
ProteomicsInternal Ribosome Entry Site RNAs act in trans through an antisense sequence
SINEUPs are antisense long non-coding RNAs (lncRNAs) that increase translation of overlapping mRNAs through the activity of two domains: an embedded SINEB2 sequence UP-regulates translation (Effector Domain) while the antisense region provides target specificity (Binding Domain). In this study, we ...
ORGANISM(S): Homo sapiens (Human) 
2025-08-25 | PXD028571 | Pride
Proteomics Circ5533 Pxk Binding domain Sineups 
UnknownThe effectiveness of breakfast recommendations on weight loss: a randomized controlled trial.
Not available
S-EPMC4095657 | biostudies-literature
UnknownEvery 2-month belatacept maintenance therapy in kidney transplant recipients greater than 1-year posttransplant: A randomized, noninferiority trial.
Not available
S-EPMC8363674 | biostudies-literature
UnknownReads2Type: a web application for rapid microbial taxonomy identification.
Not available
S-EPMC4659212 | biostudies-literature
MetabolomicsGNPS Chemodiversity in Aspergillus section Flavi
Aspergillus section Flavi includes some of the most famous mycotoxin producing filamentous fungi known to mankind. Most notably, food contaminating species such as A. flavus and A. parasiticus are capable of producing aflatoxins, while other non-toxinogenic species such as A. oryzae and A. sojae are...
ORGANISM(S): Aspergillus Sp. (ncbitaxon:5065) 
2020-12-15 | MSV000086604 | GNPS
TranscriptomicsNanopore RNA-seq of human osteosarcoma cell line U2OS treated with siRNA against MDC1, PLRG1, or control siRNA with or without pladienolide B
The purpose was to investigate transcript and splicing changes in U2OS cells following siRNA-mediated depletion of MDC1 and PLRG1 or treatment with the splicing inhibitor pladienolide B. Cells were treated with control siRNA as control condition. Nanopore sequencing of cDNA was performed after libra...
ORGANISM(S): Homo sapiens 
2023-01-11 | E-MTAB-12497 | biostudies-arrayexpress
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