Larsson L L - OmicsDI

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Unknown (1104)
Transcriptomics (131)
Proteomics (39)
Genomics (10)
Metabolomics (8)

Organisms

Homo sapiens (75)
Mus musculus (48)
Drosophila melanogaster (11)
Rattus norvegicus (6)
Sus scrofa (5)
Rhizobium leguminosarum (3)
Oncorhynchus mykiss (3)
Amphimedon queenslandica (2)
Platynereis dumerilii (2)
Oryza sativa Japonica Group (2)
Hypsibius dujardini (1)
Mnemiopsis leidyi (1)
Streptococcus dysgalactiae subsp. equisimilis (1)
Zoarces viviparus (1)
Strongylocentrotus purpuratus (1)
Mycobacterium tuberculosis CDC1551 (1)
Streptococcus pyogenes (1)
Nematostella vectensis (1)
Medicago truncatula (1)
mixed sample (1)
Hordeum vulgare (1)
Salmo salar (1)
Oryctolagus cuniculus (1)
Caenorhabditis elegans (1)
Triticum aestivum (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Betaherpesvirinae (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (136)
pride (33)
MetaboLights (8)
EGA (5)
jPOST (3)
MassIVE (3)
ENA (1)

Tissue

Cell culture (7)
Heart (7)
Permanent cell line cell (6)
C2C12 cell (4)
Fibroblast (3)
Liver (3)
Skeletal muscle cell line (3)
Epithelial cell of pancreas (2)
Kidney (2)
Lung (2)
Muscle cell (2)
Pancreatic adenocarcinoma cell line (2)
Skeletal muscle (2)
Artery (1)
Blood (1)
Blood cell (1)
Brain (1)
Brown adipose tissue (1)
Cervical cancer cell line (1)
Culture supernatant (1)
Diaphragm (1)
Epithelial cell of lung (1)
Fungal cell (1)
Skeletal muscle myoblast (1)
Skeletal muscle tissue (1)
Spleen (1)
Uvea (1)

Disease

Normal (2)
Myeloma (1)
Adenocarcinoma (1)
Acute leukemia (1)
Cervix carcinoma (1)
Diaphragm disease (1)
Idiopathic pulmonary fibrosis (1)
Lung cancer (1)
Pancreatic ductal adenocarcinoma (1)
Pancreatic ductal carcinoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (21)
Bottom-up proteomics (9)
Data-dependent acquisition (9)
Mass spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Illumina 450K, Bisulfite-Seq (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
NextSeq 500 (5)
Illumina HiSeq 2500 (3)
Illumina HiSeq 3000 (3)
Xevo G2 QTOF (Waters) (3)
Axon- GenePix4000B (2)
Illumina HiSeq 2000 (2)
Exactive (Thermo Scientific) (2)
BD FACSMelody (1)
Microcentrifuge (1)
C1 Single-Cell Auto Prep System, Fluidigm (1)
Covaris, NEBNext Ultra II DNA library prep kit (1)
Computater Servers UPPMAX-SNIC. (1)
Illumina Tru-seq RNA (1)
NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE) (1)
Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
Sequel (1)
ScanArray scanning hardware (1)
BGISEQ-500 (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
Q Exactive (1)
Q Exactive Plus (1)
Bruker (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2016 (21)
2013 (20)
2012 (17)
2010 (12)
2020 (11)
2015 (11)
2011 (11)
2018 (9)
2026 (9)
2014 (8)
2009 (8)
2024 (7)
2007 (7)
2025 (6)
2023 (5)
2019 (5)
2017 (4)
2008 (4)
2021 (3)
2022 (2)
2006 (2)

CHEBI ID

CHEBI:18089 (3)
CHEBI:28717 (3)
CHEBI:105799 (2)
CHEBI:116314 (2)
CHEBI:131438 (2)
CHEBI:131440 (2)
CHEBI:131443 (2)
CHEBI:131590|CHEBI:91296 (2)
CHEBI:132328|CHEBI:16113 (2)
CHEBI:15354 (2)
CHEBI:15756 (2)
CHEBI:15843 (2)
CHEBI:16347 (2)
CHEBI:16411 (2)
CHEBI:16737 (2)
CHEBI:16755 (2)
CHEBI:16827 (2)
CHEBI:16828 (2)
CHEBI:16919 (2)
CHEBI:16990 (2)
CHEBI:17295 (2)
CHEBI:17308 (2)
CHEBI:17351 (2)
CHEBI:17650 (2)
CHEBI:17687 (2)
CHEBI:17750 (2)
CHEBI:17775 (2)
CHEBI:17895|CHEBI:89461 (2)
CHEBI:18102 (2)
CHEBI:18185 (2)

Metabolite Name

1,2-dilinoleoyl-sn-glycero-3-phosphocholine (2)
1,2-dioleoyl-sn-glycero-3-phosphocholine|1,2-dipetroselenoyl-sn-glycero-3-phosphocholine (2)
1,2-dipalmitoleoyl-sn-glycero-3-phosphocholine (2)
1,2-dipalmitoyl-sn-glycero-3-phosphocholine (2)
1,3,7-Trimethyluric acid (2)
1-O-1'-(Z)-octadecenyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (2)
1-Stearoyl-2-Hydroxy-sn-Glycero-3-Phosphoethanolamine (2)
1-arachidoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-linoleoyl-2-stearoyl-sn-glycerol (2)
1-oleoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-oleoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (2)
1-oleoyl-2-palmitoyl-sn-glycero-3-phosphocholine (2)
1-palmitoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine (2)
1-palmitoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-palmitoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (2)
1-stearoyl-2-arachidonoyl-sn-glycero-3-phosphoethanolamine|C15-20:4 Phosphatidylcholine (2)
1-stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-vaccenoyl-2-palmitoyl-sn-glycerol (2)
10-nitro-9E-octadecenoic acid|9-nitro-9E-octadecenoic acid (2)
17-phenyl trinor Prostaglandin E2|17-phenyl trinor Prostaglandin D2 (2)
2,6 dimethylheptanoyl carnitine (2)
2-(4-hydroxyphenyl)ethanol (2)
2-Ketohexanoic acid (2)
3-Indolepropionic acid (2)
3a,6b,7b-Trihydroxy-5b-cholanoic acid (2)
4-Androsten-11Beta-ol-3,17-dione|11β-Hydroxy-4-androstene-3,17-dione (2)
4-Hydroxy-3-methylbenzoic acid (2)
6-hydroxy-5-cholestanol|cholesterol (2)
7-Ketocholesterol (2)
Acetaminophen (2)

First Public Date

2014 (1)

Modification

N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (80)
RNA-seq of coding RNA (27)
RNA-seq of coding RNA from single cells (6)
ChIP-chip by tiling array (4)
Unknown experiment type (3)
Human - Two-color microarray (3)
Transcription profiling by tiling array (3)
Cell line - Single-cell sequencing (2)
ChIP-seq (2)
DNA-seq (2)
Baseline (1)
Comparative genomic hybridization by array (1)
RNA-seq of total RNA (1)

Release Date

2020 (124)
2025 (119)
2022 (116)
2024 (111)
2021 (105)
2023 (97)
2018 (93)
2019 (82)
2016 (69)
2017 (49)
2015 (44)
2014 (42)
2012 (40)
2013 (39)
2011 (26)
2010 (20)
2026 (16)
2009 (13)
2007 (9)
2008 (8)
2006 (8)
2005 (4)
1998 (3)
2004 (2)
2002 (1)

Lab affiliation

Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (4)
Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
Utrecht University (2)
Biochemical Proteomics Group, Department of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, 82152-Martinsried, Germany (1)
Cambridge Institute for Medical Research, University of Cambridge, CB2 0XY, UK (1)
Cell Biology Department Institute of Integrative Biology of the Cell (I2BC,UMR9198) 1, Avenue de la Terrasse (1)
Department of Immunology, Genetics & Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden. (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden Max Planck Institute Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry (1)
Depratment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (1)
Dept of chemistry BMC Uppsala university Sweden (1)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (1)
Derpatment of Medical Biochemistry, Uppsala University, Uppsala, Sweden. (1)
Division of Rheumatology, Department of Medicine Solna, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden (1)
Industrial Biotechnology, Chalmers University of Technology (1)
Infection Medicine Proteomics BMC D13 Klinikgatan 28 22241 Lund Sweden (1)
Karolinska Institute Division of Molecular Metabolism Department of Medical Biochemistry and Biophysics (1)
Krefting Research Centre, Department of Internal Medicine and Clinical Nutrition, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden (1)
Lowy Cancer Research Centre School of Medical Sciences UNSW SYDNEY NSW 2052 AUSTRALIA (1)
Lung Biology, Department of Experimental Medical Science, Lund University, Sweden (1)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b (1)
Proteomics Core Facility, University of Gothenburg, Sweden (1)
Uppsala University Dept. Chemistry-Biomedical center, Analytical chemistry Box 599 SE-751 24 Uppsala (1)
Uppsala University, Uppsala, Sweden (1)

Tags

xref:PubMed:22606260 (1)

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Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst].

Not available

S-EPMC1698656 | biostudies-literature

eIF4E phosphorylation promotes tumorigenesis and is associated with prostate cancer progression

Translational regulation plays a critical role in cell growth and proliferation, and its dysregulation results in cancer. Aberrant expression of the mRNA 5’cap-binding protein, eIF4E, has been implicated in cancer development and progression. eIF4E activity is promoted by phosphorylation. Here we sh...

ORGANISM(S): Mus musculus

2010-08-17 | E-GEOD-17451 | biostudies-arrayexpress

MitoPark mice mirror the slow progression of key symptoms and L-DOPA response in Parkinson's disease.

Not available

S-EPMC4154513 | biostudies-literature

A revised genus-level classification for Cerrenaceae (Polyporales, Agaricomycetes).

Not available

S-EPMC10918759 | biostudies-literature

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals

Abstract Dysfunction of the oxidative phosphorylation (OXPHOS) system is a major cause of human disease and the cellular consequences are highly complex. Here, we present comparative analyses of mitochondrial proteomes, cellular transcriptomes and targeted metabolomics of five knockout mouse strains...

ORGANISM(S): Mus musculus (Mouse)

2022-08-09 | PXD035880 | Pride

Fibrotic Myofibroblasts Manifest Genome-Wide Derangements of Translational Control

As a group, fibroproliferative disorders of the lung, liver, kidney, heart, vasculature and integument are common, progressive and refractory to therapy. They can emerge following toxic insults, but are frequently idiopathic. Their enigmatic propensity to resist therapy and progress to organ failure...

ORGANISM(S): Homo sapiens

2008-11-20 | E-GEOD-11196 | biostudies-arrayexpress

Waterborne beclomethasone diproprionate affects fish while its metabolite beclomethasone is not taken up

Investigation of transcriptome expression changes in liver tissue of rainbow trout exposed beclomethasone diproprionate (1 M-BM-5g/L nominal concentration) in a flow through set up for 2 weeks A four chip (x12) study using total RNA prepared from liver.

ORGANISM(S): Oncorhynchus mykiss

2014-12-10 | E-GEOD-57219 | biostudies-arrayexpress

Chromatin IP of POF, HP1 and H3K9ac in S2 cells and salivary glands.

Two chromosome-targeting and gene regulatory systems are present in Drosophila melanogaster. The male X-chromosome is targeted by the male-specific lethal complex believed to mediate the two-fold up-regulation of the X-linked genes. The highly heterochromatic 4th chromosome is specifically targeted ...

ORGANISM(S): Drosophila melanogaster

2007-10-02 | E-GEOD-8296 | biostudies-arrayexpress

A case study on breastfeeding education in Lebanon's public medical school: exploring the potential role of social networks in medical education.

Not available

S-EPMC6179049 | biostudies-literature

Copy-choice recombination during mitochondrial L-strand synthesis causes DNA deletions.

Not available

S-EPMC6377680 | biostudies-literature

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1293 Results

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