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MetabolomicsMetabolomic Responses to Circadian Rhythm Disruption in Zebrafish

Circadian rhythms are essential biological oscillators that synchronize physiological processes, cellular homeostasis, and systemic metabolism with the Earth's natural 24-hour light-dark cycle. While circadian rhythm disruption (CRD) is highly prevalent in modern society due to factors such as sh...

2026-06-23 | MTBLS14815 | MetaboLights
TranscriptomicsTranscriptional profiling by array to characterize temperature stress responses in larval zebrafish
96 hpf zebrafish larvae were exposed to cold (16 degrees C) or heat (34 degrees C) stress for 2, 12, 24 and 48h. Time-matched controls were maintained at 28 degrees C. The transcriptional responses elicited by temperature stress in larval zebrafish were investigated by microarray.
ORGANISM(S): Danio rerio 
2012-02-01 | E-MTAB-826 | biostudies-arrayexpress
ProteomicsProteome changes in larval zebrafish (Danio rerio) and fathead minnow (Pimephales promelas) exposed anatoxin-a fumerate.
Characterization of proteome changes to zebrafish and fathead minnow following exposure to the Anatoxin-a surrogate anatoxin-fumerate.
ORGANISM(S): Pimephales Promelas (ncbitaxon:90988) Danio Rerio (ncbitaxon:7955) 
2023-11-29 | MSV000093536 | MassIVE
TranscriptomicsTranscriptomic characterization of temperature stress responses in larval zebrafish
96 hpf zebrafish larvae were exposed to cold (16 C) or heat (34 C) stress for 2 and 48h. Time-matched controls were maintained at 28 C. The transcriptional responses elicited by temperature stress in larval zebrafish were investigated by microarray.
ORGANISM(S): Danio rerio 
2012-02-15 | E-MTAB-983 | biostudies-arrayexpress
TranscriptomicsZebrafish germline small RNAs
Piwi proteins specify an animal-specific subclass of the Argonaute family, that in vertebrates are specifically expressed in germ cells. We demonstrate that zebrafish Piwi (Ziwi) is expressed in both the male and the female gonad, and is a component of a germline specifying structure, called nuage. ...
ORGANISM(S): Danio rerio 
2007-04-04 | E-GEOD-7131 | biostudies-arrayexpress
TranscriptomicsscRNAseq libraries of pooled kidney samples from wild type (ZF1) versus CRISPR-targeted renin knockout (ZF2) zebrafish
Libraries were made to compare the transcriptome of renin lineage cells (RLCs) from wild-type versus ren knockout zebrafish kidneys. RLCs were FAC sorted from pooled kidneys of ren+/+ or ren-/- zebrafish, which carried ren:RFP and acta2:EGFP reporter genes, allowing the isolation of renin-expressin...
ORGANISM(S): Danio rerio 
2022-06-10 | E-MTAB-11079 | biostudies-arrayexpress
TranscriptomicsDanio rerio larvae exposed to SSRIs Fluoxetine and Sertraline
Pharmaceutical chemicals used in human medicine are released into surface waters via municipal effluents and pose a risk for aquatic organisms. Among these substances are selective serotonin reuptake inhibitors (SSRIs) which can affect aquatic organisms at sub ppb concentrations. To better underst...
ORGANISM(S): Danio rerio 
2012-09-06 | E-GEOD-31712 | biostudies-arrayexpress
TranscriptomicsRegenerating zebrafish fin fold vs. uncut control
Teleost fish have the remarkable ability to regenerate their body parts including heart, spinal cord, and the caudal fin, while many higher vertebrates including us humans have only a limited ability. To facilitate molecular and genetic approaches for regeneration, we previously established an assay...
ORGANISM(S): Danio rerio 
2010-05-19 | E-GEOD-11391 | biostudies-arrayexpress
TranscriptomicsActivating transcription factor 6 is necessary and sufficient for alcoholic fatty liver disease in zebrafish
ATF6 is a key regulator of the unfolded protein response. Through use of zebrafish and cultured cells we demonstrate that ATF6 drives fatty liver disease by interaction with fatty acid synthase (FASN). Total small RNA from livers of 5 dpf larval zebrafish were collected: 2 batches of Tg(fabp10:nls-m...
ORGANISM(S): Danio rerio 
2014-05-01 | E-GEOD-56498 | biostudies-arrayexpress
GenomicsTranscriptome analysis of the larval zebrafish brain
Transcriptome analysis of the larval zebrafish brain
PRJNA532886 | ENA
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