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Other,MultiomicsUpload negative ionisation mode fragmentation data of clinical cohort from MS2LDA+ paper
Human urine samples measured using pHILIC LC-MS/MS and LC-MS in negative ionisation mode. Urine samples were from clinical cohort in which we expected to find substantial amounts of xenobiotics. Samples were used for MS2LDA substructure discovery to find the building blocks of metabolomics.
ORGANISM(S): Homo Sapiens 
2019-03-05 | MSV000083527 | MassIVE
Other,MultiomicsUpload positive ionisation mode fragmentation data of clinical cohort from MS2LDA+ paper
Human urine samples measured using pHILIC LC-MS/MS and LC-MS in positive ionisation mode. Urine samples were from clinical cohort in which we expected to find substantial amounts of xenobiotics. Samples were used for MS2LDA substructure discovery to find the building blocks of metabolomics.
ORGANISM(S): Homo Sapiens 
2019-03-05 | MSV000083526 | MassIVE
TranscriptomicsCotranslational signal independent SRP preloading during membrane targeting
Cotranslational targeting into the endoplasmic reticulum (ER) by the Signal Recognition Particle (SRP) is a key event determining polypeptide fate in eukaryotic cells. Here, we globally define the principles and mechanisms of SRP binding and ER targeting in vivo. Cotranslational targeting through SR...
ORGANISM(S): Saccharomyces cerevisiae 
2016-08-03 | E-GEOD-74393 | biostudies-arrayexpress
ProteomicsOsteomacs promote maintenance of murine hematopoiesis through megakaryocyte-induced upregulation of Embigin and CD166
Maintenance of hematopoietic stem cell (HSC) function in the niche is an orchestrated event. Osteomacs (OM), are key cellular components of the niche. Previously, we documented that osteoblasts, OM, and megakaryocytes interact to promote hematopoiesis. Here, we further characterize OM and identify m...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2024-01-11 | MSV000093840 | MassIVE
MetabolomicsGlobal ocean lipidomes show a universal relationship between temperature and lipid unsaturation

Global-scale surveys of plankton communities using “omics” techniques have revolutionized our understanding of the ocean. Lipidomics has demonstrated the potential to add further essential insights on ocean ecosystem function but has yet to be applied on a global scale. We analyzed 930 lipid samp...

2021-11-08 | MTBLS2838 | MetaboLights
MetabolomicsTrans-tissue molecular coordination in high-intensity physical activity
High-intensity physical activity has major impacts in different parts of the body. However, the regulatory coordination between different tissues to support the high physical demands is poorly understood. Here we performed a multi-omics analysis of blood plasma, urine and saliva from a group of fire...
2025-07-03 | MTBLS1891 | MetaboLights
TranscriptomicsDeciphering the molecular immune response to COVID-19 using single cell multi-omics
Multi-omics single-cell profiling of surface proteins, gene expression and lymphocyte immune receptors from hospitalised COVID-19 patient peripheral blood immune cells and healthy controls donors. Identification of the coordinated immune cell compositional and state changes in response to SARS-CoV-2...
ORGANISM(S): Homo sapiens 
2021-03-17 | E-MTAB-10026 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of soybean cyst nematode-induced syncytia in soybean - time series
Developmental expression profiling of SCN-induced syncytia in soybean (W82) during a compatible interaction.
ORGANISM(S): Glycine max 
2007-06-09 | E-MEXP-876 | biostudies-arrayexpress
TranscriptomicsGene expression change caused by CYS4 alleles
Each strain was grown overnight then diluted in fresh YPD to 10% v/v and grown for 3 hours at 30'C. Total RNA was isolated using an RNeasy mini kit, reverse transcribed, labeled with either Cy3 or Cy5, and hybridized to epoxy-coated slides with 6388, 70mer oligos (Qiagen-Operon). After an overnight ...
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-14 | E-GEOD-14102 | biostudies-arrayexpress
TranscriptomicsGene expression profile of abf1-1 mutant at 36 degrees C
The abf1-1 mutant and wild type cells were grown at 30 degrees C in YPAD until OD600 reached 1.0-1.2. The same volume of 42 degrees C preheated YPAD was added for each flask. After 45 min incubation at 36 degrees C, cells were harvested and RNA was isolated. Four repeats of microarray results are in...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-09 | E-GEOD-1492 | biostudies-arrayexpress
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