Lc-ms/sm - OmicsDI

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Unknown (511)
Proteomics (52)
Metabolomics (40)
Genomics (6)
Transcriptomics (4)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (45)
Andropogon gerardi (45)
Bacteria (45)
Bartonella quintana JK 31 (45)
Canis lupus familiaris (45)
Cnidaria (45)
Ectopseudomonas oleovorans CECT 5344 (45)
Ensifer adhaerens (45)
Halictus scabiosae (45)
Human immunodeficiency virus 1 (45)
Mesocricetus auratus (45)
Miscanthus x giganteus (45)
Morchella importuna (45)
Mus musculus (45)
Panicum virgatum (45)
Pseudomonas aeruginosa PA103 (45)
Pseudomonas aeruginosa SJTD-1 (45)
Rabies virus Nishigahara RCEH (45)
Rattus norvegicus (45)
Rattus rattus (45)
Rhodococcus jostii RHA1 (45)
Rhodopseudomonas palustris (45)
Shigella (45)
Mus musculus (5)
Aspergillus nidulans (2)
Homo sapiens (1)
Aspergillus fumigatus (1)
Pseudomonas aeruginosa PAO1 (1)
Streptomyces (1)
cellular organisms (1)

Organisms

Mus musculus (2)
Aspergillus nidulans (1)
Aspergillus fumigatus (1)

Repository

pride (45)
MetaboLights (38)
jPOST (5)
ENA (5)
biostudies-arrayexpress (3)
geo (2)
GNPS (2)
MassIVE (2)

Tissue

Cell culture (11)
Epithelial cell (4)
Blood (3)
Heart (3)
Blood plasma (2)
Blood serum (2)
Brain (2)
Permanent cell line cell (2)
Skeletal muscle (2)
Adipose tissue (1)
Astrocyte (1)
Blood platelet (1)
CCD-18Co cell (1)
Colon (1)
Connective tissue (1)
Fibroblast (1)
Hepatocyte (1)
Leukocyte (1)
Liver (1)
Melanocyte (1)
Mycelium (1)
Neuron (1)
Neutrophil (1)
Peripheral blood mononuclear cell (1)
Plant cell (1)
Primary cell (1)
Root nodule (1)
Saliva (1)
Stem cell (1)
Tooth enamel (1)

Disease

Breast cancer (2)
Cervix carcinoma (2)
Alzheimer's disease (1)
Babesiosis (1)
Colon cancer (1)
Disease free (1)
Fibrosarcoma (1)
Hepatic necrosis (1)
Loiasis (1)
Parasitic helminthiasis infectious disease (1)
Parkinson's disease (1)
Permanent neonatal diabetes mellitus (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (45)
Mass spectrometry (31)
Shotgun proteomics (29)
Mass spectrometry assay (7)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (6)
Gel-based experiment (3)
SWATH MS (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
SRM/MRM (2)
Top-down proteomics (2)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (20)
Liquid Chromatography MS - positive - reverse phase (18)
Liquid Chromatography MS - (5)
Liquid Chromatography MS - positive - reverse-phase (3)
Liquid Chromatography MS - negative - reverse-phase (3)
Liquid Chromatography MS - positive - hilic (3)
Direct infusion MS - positive (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - alternating - reverse phase (2)
MaXis (1)
Q Exactive (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
LTQ-FT (Thermo) (1)
Xevo TQ-S (Waters) (1)
6460 Triple Quadrupole LC/MS (Agilent) (1)
PTR-MS (1)
Tandem Gas Chromatography MS - positive (1)
QExactive Plus (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Direct infusion MS - negative (1)
Gas Chromatography MS - (1)
TSQ Vantage (Thermo Scientific) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2022 (17)
2021 (12)
2026 (11)
2025 (10)
2023 (10)
2024 (7)
2018 (5)
2020 (5)
2016 (4)
2019 (4)
2017 (4)
2011 (2)
2014 (2)
2015 (2)

CHEBI ID

CHEBI:64563 (8)
CHEBI:64561 (7)
CHEBI:22653 (7)
CHEBI:64525 (6)
CHEBI:64481 (6)
CHEBI:64549 (6)
CHEBI:64566 (6)
CHEBI:67057 (6)
CHEBI:64568 (6)
CHEBI:28044 (6)
CHEBI:29016 (6)
CHEBI:25094 (6)
CHEBI:67056 (6)
CHEBI:64567 (6)
CHEBI:64483 (6)
CHEBI:64560 (6)
CHEBI:17351 (6)
CHEBI:30769 (6)
CHEBI:71731 (5)
CHEBI:71729 (5)
CHEBI:66856 (5)
CHEBI:91312 (5)
CHEBI:74349 (5)
CHEBI:64559 (5)
CHEBI:64424 (5)
CHEBI:85700 (5)
CHEBI:64521 (5)
CHEBI:64431 (5)
CHEBI:64524 (5)
CHEBI:64519 (5)

Metabolite Name

PC(18:2/18:2) (3)
Proline (3)
Lysine (3)
Arginine (3)
Histidine (3)
Methionine (3)
Glutamine (3)
Alanine (3)
Glycine (3)
Tyrosine (3)
Leucine (3)
Phenylalanine (3)
Tryptophan (3)
LPE 18:2 (3)
LPE 18:1 (3)
LPE 18:0 (3)
Cholesterol (3)
LPC 18:3 (3)
LPE 20:4 (3)
PI 36:3 (2)
PI 36:2 (2)
PI 36:1 (2)
PI 36:0 (2)
PI 34:1 (2)
PI 34:0 (2)
PG 36:1 (2)
PC 37:4 (2)
PC 35:0 (2)
DG 34:4 (2)
CE 22:4 (2)

First Public Date

2025 (1)
2022 (1)
2017 (1)
2016 (1)
2014 (1)

Classification

fungi (2)

Modification

N6 (1)

Study type

Transcription profiling by array (2)
ChIP-seq (1)

Release Date

2021 (75)
2022 (59)
2025 (57)
2023 (52)
2024 (50)
2020 (42)
2018 (27)
2016 (22)
2014 (21)
2012 (15)
2017 (14)
2015 (14)
2013 (14)
2011 (13)
2019 (12)
2010 (9)
2026 (6)
2009 (6)
2008 (3)
2007 (2)
2004 (1)

Lab affiliation

Institut Pasteur 25 Rue du Docteur Roux Paris 75015 (2)
1. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biosciences and bioengineering Department, IIT Bombay (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Cedars-Sinai Precision Biomarker Laboratories (1)
Chair of Animal Physiology, Veterinary Sciences, LMU Munich, Germany (1)
Chemical Sciences Division, Oak Ridge National Laboratory (1)
China. Beijing. Capital Normal University. College of Life Science. Lab of molecular genetics and Proteomics. (1)
College of Science and Mathematics, Kennesaw State University, USA (1)
Department of Biochemistry, Charité Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany Berlin Institute of Health (BIH) at Charité Universitätsmedizin Berlin, Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Roosevelt Dr, Headington, Oxford OX3 7BN, UK (1)
Department of Biological Sciences, University of Notre Dame,Notre Dame, INDIANA 46556, USA (1)
Department of Life Sciences, University of Modena and Reggio Emilia (1)
Department of Life and Environmental Sciences, Biomedical section, Proteomics Lab. University of Cagliari (1)
Division of Physical Chemistry, Institute Ruđer Bošković, Zagreb, Croatia (1)
Emory University School of Medicine Departments of Biochemistry and Neurology (1)
G5 Chromatin and Infection, Institut Pasteur, Paris, France. (1)
Harvard Medical School (1)
Helen Jo Whitsell Endowed Professor and Chair Department of Chemical Physiology and Biochemistry, OHSU, Portland OR, USA (1)
Institut Pasteur (1)
Institute of Veterinary Pharmacology and Toxicology, Vetsuisse Faculty, University of Zurich, Winterthurerstr. 260, 8057 Zurich, Switzerland (1)
Laboratorio de Proteomica e Aracnídeos, Diretoria de Pesquisa e Desenvolvimento, Fundação Ezequiel Dias - FUNED, Belo Horizonte, MG - Brazil (1)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) Robert-Rössle-Strasse 10, 13125 Berlin (Germany) Department of Chemistry, Humboldt Universität zu Berlin Brook-Taylor-Straße 2, 12489 Berlin (Germany) (1)
Masaryk Memorial Cancer Institute, Zluty kopec, Brno, Czech Republic (1)
Max-Planck-Institute for Multidisciplinary Sciences Bioanalytical Mass Spectrometry Group Am Fassberg 11 D-37077 Goettingen Germany (1)
Medical University of Bialystok (1)
Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Parkville, Victoria, Australia (1)
Mitochondrial Biology Group (1)
Mitochondrial biology group, Institut Pasteur, Paris (1)
Professor of Chemical Physiology and Biochemistry, School of Medicine at OHSU Chair, Chemical Physiology and Biochemistry, School of Medicine Helen Jo Whitsell Dean's Leadership Professor Graduate Program in Biomedical Sciences, School of Medicine (1)
Qingdao Agriculture University (1)

Tags

pathogen:fungus (2)
pathogen (2)

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4D-DIA proteomic analysis of SMT-induced cytotoxicity in B16F10 mouse melanoma cells

This dataset contains a 4D-DIA proteomic analysis of B16F10 mouse melanoma cells treated with SMT (SM@CMC-KP101). B16F10 cells were divided into two groups: a PBS control group and an SMT treatment group. After drug exposure, cellular proteins were extracted, digested and analyzed by LC-MS/MS using ...

ORGANISM(S): Mus musculus (Mouse)

2026-04-02 | PXD074961 | Pride

Genome-Wide Transcriptome and Chromatin Analysis of Aspergillus nidulans Primary and Secondary Metabolism Reveals Crucial Function for a Kdm5-Family Histone Demethylase.

Histone posttranslational modifications (HPTMs) are involved in regulating the synthesis of fungal bioactive compounds. The exact molecular mechanisms of the silencing/activation of secondary metabolism (SM) clusters by these epigenetic events however are not yet fully understood. This work applies ...

ORGANISM(S): Aspergillus nidulans

2016-04-01 | GSE72126 | GEO

Genome-Wide Transcriptome and Chromatin Analysis of Aspergillus nidulans Primary and Secondary Metabolism Reveals Crucial Function for a Kdm5-Family Histone Demethylase.

ORGANISM(S): Aspergillus nidulans

2016-04-01 | E-GEOD-72126 | biostudies-arrayexpress

A multivalent OMV vaccine induces broad protection against major K. pneumoniae disease-causing serotypes

Kp‑OMV4 is a multivalent outer membrane vesicle (OMV)–based vaccine generated from four multidrug‑resistant Klebsiella pneumoniae strains expressing the predominant O‑antigen serotypes O1, O2, O3 and O5, which together account for most invasive disease worldwide. OMVs were purified, characterized by...

ORGANISM(S): Klebsiella pneumoniae IS43

2026-09-29 | PXD072958 | Pride

Lc-ms/sm. k. pneumoniae. omvs

Quantitative acetylome analysis of Fusarium oxysporum

Quantitative proteome and acetylome analyses were conducted by comparing the acetylation levels of the SM to those of the NM. The collected cellular proteins were extracted, digested, and labeled by different TMTs. For acetylation profiling, the pan acetyl-lysine antibody was employed to enrich the ...

ORGANISM(S): Fusarium cf. oxysporum

2022-06-09 | PXD029583 | Pride

Lysine acetylation f. oxysporum endoplasmic reticulum

Extracellular vesicles may provide an alternative detoxification pathway during skeletal muscle myoblast ageing.

Not available

S-EPMC11336379 | biostudies-literature

Reelin Increases the Sphingomyelin Content of the Plasma Membrane and Affects the Surface Expression of GPI-Anchored Proteins in Hippocampal Neurons.

Not available

S-EPMC12406644 | biostudies-literature

Effects of cadmium on the synthesis of active ingredients in Salvia miltiorrhiza

Not available

S-EPMC10224630 | biostudies-literature