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Transcriptomics (823)
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Organisms

Homo sapiens (255)
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Organisms

Homo sapiens (82)
Mus musculus (38)
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plant metagenome (2)
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soil metagenome (2)
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Juniperus chinensis (1)
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Spirosoma sp. Didoo2 (1)
Spirosoma sp. Didoo1 (1)
Flagellimonas sp. YJCJ13 (1)
Flagellimonas sp. YJCJ7 (1)
Escherichia coli UTI89 (1)
Epipremnum aureum (1)
Xylella fastidiosa subsp. fastidiosa (1)

Repository

biostudies-arrayexpress (761)
ENA (374)
geo (141)
pride (63)
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ExpressionAtlas (1)

Tissue

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Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
1dpi (1)
Systemic juvenile idiopathic arthritis (1)
Infiltrating ductal carcinoma (1)
Hodgkin lymphoma, mixed cellularity, stage IV (1)
Infected (1)
MFC II (1)
Mammary adenocarcinoma (pleural effusion) (1)

Technology Type

Mass Spectrometry (66)
Shotgun proteomics (37)
Mass spectrometry (19)
Affinity purification coupled with mass spectrometry proteomics (12)
NMR spectroscopy (10)
Bottom-up proteomics (10)
Mass spectrometry assay (3)
ESI (3)
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Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (18)
Scanning hardware (11)
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ScanArray 4000 [PerkinElmer] (7)
GenePix 4000B [Axon Instruments] (7)
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Illumina HiSeq 2500 (6)
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GenePix 4000A [Axon Instruments] (4)
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Other (2)
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418 [Affymetrix] (2)
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ILLUMINA (1)
Thermocycler; SPRI magnetic bead rack; Qubit fluorometer; Agilent Bioanalyzer (1)
Branson Digital Sonifier; refrigerated benchtop centrifuge; rotator; magnetic rack (1)

Publication Date

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2011 (85)
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2012 (56)
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2004 (25)
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2018 (14)
2003 (3)

UNIPROT ID/AC

14310_ARATH (3)
14311_ARATH (3)
14332_ARATH (3)
14333_ARATH (3)
14334_ARATH (3)
14335_ARATH (3)
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3702.AT1G29920.1 (3)
3702.AT2G21385.4 (3)
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6PGD1_ARATH (3)
Q06598 (1)
P39109 (1)
P23900 (1)
P32485 (1)

CHEBI ID

CHEBI:18237 (10)
CHEBI:28044 (10)
CHEBI:28300 (9)
CHEBI:24898 (9)
CHEBI:25017 (9)
CHEBI:27266 (9)
CHEBI:16449 (9)
CHEBI:25094 (8)
CHEBI:15428 (8)
CHEBI:30769 (8)
CHEBI:26271 (7)
CHEBI:22660 (7)
CHEBI:27570 (7)
CHEBI:26986 (7)
CHEBI:15741 (7)
CHEBI:15366 (7)
CHEBI:78320 (7)
CHEBI:22653 (6)
CHEBI:30751 (6)
CHEBI:18186 (6)
CHEBI:17234 (6)
CHEBI:17754 (6)
CHEBI:15354 (6)
CHEBI:16856 (5)
CHEBI:17992 (5)
CHEBI:15611 (5)
CHEBI:16811 (5)
CHEBI:46195 (3)
CHEBI:29242 (1)
CHEBI:36080 (1)

Metabolite Name

Choline (6)
Leucine (5)
Phenylalanine (5)
4-Hydroxybenzaldehyde (5)
L-Tryptophan (5)
Isoleucine (5)
Glutamine (5)
Xanthine (5)
Histidine (4)
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Uridine (4)
Lysine (4)
Glutamine (4)
Alanine (4)
L-alanine (4)
Glycine (4)
L-valine (4)
Uracil (4)
Valine (4)
Fumaric acid (4)
Taurine (4)
Suberylglycine (4)
Proline (4)
Phenylalanine (4)
Glutaric acid (4)
Azelaic acid (4)
L-Phenylalanine (4)
Hypoxanthine (4)
Triacanthine (3)
1-Carboxyethylleucine (3)

First Public Date

2026 (51)
2024 (51)
2014 (41)
2018 (39)
2025 (33)
2023 (32)
2022 (26)
2021 (26)
2020 (23)
2019 (16)
2016 (15)
2017 (8)
2015 (7)
2013 (4)
2012 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (2)
Physiologically based pharmacokinetic model (1)

Study status

Completed (9)

Lab affiliation

Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (2)
ETH Zurich, Department of Biology, Institute of Molecular Health Sciences (2)
1) Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom 2) Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, United Kingdom (1)
1- Center for Applied Medical Research, University of Navarra, Pio XII 55 Ave, 31008, Pamplona, Spain 2-Institute of Health Research of Navarra (IdiSNA), Pamplona, Spain (1)
1. Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2. Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3. Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Copenhagen, Denmark. (1)
CAS Center for Excellence in Molecular Plant Sciences, Chinese academy of Sciences, Shanghai, 200032, China; (1)
Carnegie Mass Spectrometry Facility at Stanford (1)
Center for Biologics Evaluation and Research, U.S. Food and Drug Administration (1)
Center for Genomics and Systems Biology, New York University, New York, NY, US (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Departament of Molecular Biologi and Biochemistry, Faculty of Sciences, University of Malaga, 29071 Malaga, Spain (1)
Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague (1)
Department of Chemistry, Scripps Research (1)
Department of General Medicine, Kasturba Medical College, Manipal, Manipal Academy of Higher Education (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (1)
Department of Molecular Biophysics & Biochemistry, Yale School of Medicine, PO Box 208114, New Haven, CT, 06520 (1)
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA. (1)
Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9PL, UK. (1)
Drug Discovery and Evaluation Unit, Center for Research of Pathogenicity and Virulence of Parasites, BIOCEV, Charles University in Prague (1)
Head of Drug Discovery and Evaluation Center for Research of Pathogenicity and Virulence of Parasites Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Henan University of Chinese Medicine (1)
Institut Jacques Monod (1)
Institute of Animal Science, Guangdong Academy of Agricultural Sciences, Guangdong Key Laboratory of Animal Breeding and Nutrition, Guangzhou, 510640, China (1)
Institution of Cellular and Organismic Biology Academia Sinica (1)
Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, 100044, China (1)
Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China. (1)
Laboratoire de Spectrometrie de Masse Proteomique Institut Curie PSL Research University (1)

Keyword

Computer-aided diagnosis (1)
Colon/Rectal Cancer Rectal Cancer (1)
Sick-leave (1)
Hospital stay (1)
Colorectal polyp (1)
Artificial intelligence (1)
Morbidity (1)
Colorectal neoplasm (1)
Tinzaparin (1)
Heparin, Low-Molecular-Weight (1)
Dalteparin (1)
Colonoscopy (1)

IsPrivate

False (4)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (9)
viruses (1)

Study type

Transcription profiling by array (577)
RNA-seq of coding RNA (63)
Comparative genomic hybridization by array (13)
Methylation profiling by high throughput sequencing (13)
ChIP-seq (12)
Other (9)
DNA-seq (9)
RNA-seq of non coding RNA (9)
MicroRNA profiling by array (7)
Methylation profiling by array (7)
Unknown experiment type (6)
Interventional (6)
ChIP-chip by array (5)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by tiling array (2)
Plant - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
RNAi profiling by array (2)
Transcription profiling by RT-PCR (2)
Proteomic profiling by array (2)
Observational (2)
High-throughput sequencing (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)
ScATAC-seq (1)
Genotyping by high throughput sequencing (1)
Observational patient registry (1)

Release Date

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2005 (54)
2004 (37)
2003 (7)
2002 (6)
2001 (2)
1999 (2)
1998 (1)

Location

Denmark (2)
Iran (1)
Ireland (1)
Singapore (1)
Sweden (1)
Belgium (1)
Canada (1)
Netherlands (1)
United States (1)
France (1)

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Comprehensive analysis of metabolome and transcriptome reveals the mechanism of color formation in different leave of Loropetalum chinense var. rubrum

BACKGROUND: Loropetalum chinense var. rubrum (L. chinense var. rubrum) is a precious, native, coloured-leaf ornamental plant in the Hunan Province. We found a L. chinense var. rubrum tree with 3 different leaf colours: GL (gre...