Lee Chang C - OmicsDI

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Unknown (2472)
Transcriptomics (148)
Proteomics (47)
Genomics (22)
Metabolomics (6)
Multiomics (1)

Organisms

Homo sapiens (103)
Mus musculus (35)
Corynebacterium glutamicum ATCC 13032 (25)
Corynebacterium glutamicum (20)
Arabidopsis thaliana (6)
Drosophila melanogaster (3)
Escherichia coli (3)
Saccharomyces cerevisiae (3)
Sus scrofa (2)
Bos taurus (2)
Rattus norvegicus (2)
Picea sitchensis (1)
Pseudomonas aeruginosa (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Akkermansia muciniphila ATCC BAA-835 (1)
Recombinant Hepatitis C virus J6/JFH1-J6 (1)

Repository

biostudies-arrayexpress (155)
pride (39)
EGA (15)
MassIVE (7)
MetaboLights (6)
PanoramaPublic (1)

Tissue

Cell culture (14)
Brain (4)
Epithelial cell (3)
Heart (3)
T cell (3)
Fibroblast (2)
Lymph node (2)
Permanent cell line cell (2)
Spleen (2)
Adipose tissue (1)
B cell (1)
Blood cell (1)
Bone matrix (1)
Cardiac muscle cell (1)
Cardiocyte (1)
Cell suspension culture (1)
Colon (1)
Epithelium of pancreatic duct (1)
HEK-293 cell (1)
Hepatocyte (1)
Kidney (1)
Liver (1)
Lung (1)
Macrophage (1)
Neoplastic (1)
Nerve cord (1)
Neuronal stem cell (1)
Pancreas (1)
Pancreatic islet (1)
Pancreatic stellate cell (1)

Disease

Cardiovascular system disease (2)
Colon cancer (2)
Pancreatic ductal adenocarcinoma (2)
Colon carcinoma (1)
Acute promyelocytic leukemia (1)
Colorectal adenocarcinoma (1)
Aortic valve stenosis (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Insulinoma (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (39)
Shotgun proteomics (19)
Bottom-up proteomics (10)
Mass spectrometry (6)
Data-dependent acquisition (5)
Gel-based experiment (5)
Affinity purification coupled with mass spectrometry proteomics (4)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 1500 (6)
Illumina MiSeq (4)
Illumina HiSeq 2000 (4)
NextSeq 550 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
LTQ Orbitrap Velos (2)
Q Exactive (2)
454 GS 20 (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
HS4800 hybridization station (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
Orbitrap Exploris 240 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
5975C Series GC/MSD (Agilent) (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)

Publication Date

2012 (25)
2011 (21)
2015 (20)
2014 (18)
2013 (18)
2016 (15)
2010 (15)
2026 (12)
2024 (11)
2023 (9)
2021 (6)
2022 (6)
2025 (6)
2017 (5)
2008 (4)
2020 (3)
2019 (3)
2018 (3)
2009 (3)
2007 (1)
2006 (1)
2004 (1)
2003 (1)

CHEBI ID

CHEBI:26078 (4)
CHEBI:30769 (4)
CHEBI:33508 (4)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:16737 (3)
CHEBI:16958 (3)
CHEBI:17151 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17754 (3)
CHEBI:17822 (3)
CHEBI:17992 (3)
CHEBI:18012 (3)
CHEBI:24898 (3)
CHEBI:26984 (3)
CHEBI:27266 (3)
CHEBI:28757 (3)
CHEBI:30746 (3)
CHEBI:32816 (3)
CHEBI:35280 (3)
CHEBI:46961 (3)
CHEBI:50129 (3)
CHEBI:7916 (3)
CHEBI:83053 (3)
CHEBI:111517 (2)
CHEBI:116314 (2)
CHEBI:137271 (2)
CHEBI:142273 (2)
CHEBI:14336 (2)

Metabolite Name

Beta-alanine (2)
Citric acid (2)
Coenzyme A (2)
Creatinine (2)
Fructose (2)
Glyceric acid (2)
Glycine (2)
Hypoxanthine (2)
Isoleucine (2)
L-glutamic acid (2)
L-histidine (2)
L-lysine (2)
Myo-inositol (2)
Pseudouridine (2)
Pyroglutamic acid (2)
Quinic acid (2)
Ribose (2)
Sucrose (2)
Uracil (2)
Xanthosine (2)
(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)

Study type

Transcription profiling by array (89)
RNA-seq of coding RNA (24)
Unknown experiment type (7)
Methylation profiling by array (7)
ChIP-chip by array (5)
Comparative genomic hybridization by array (4)
ChIP-seq (4)
Transcription profiling by SAGE (2)
High-throughput sequencing (2)
RIP-seq (2)
DNA-seq (2)
ChIP-chip by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (294)
2022 (287)
2023 (246)
2025 (238)
2024 (198)
2020 (183)
2016 (161)
2018 (155)
2019 (146)
2015 (133)
2017 (109)
2014 (102)
2013 (86)
2012 (78)
2011 (65)
2010 (47)
2026 (37)
2009 (18)
2008 (18)
2005 (8)
2007 (4)
2004 (4)
2006 (3)
2003 (2)
2002 (2)
2000 (2)
2001 (1)

Lab affiliation

Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
Associate Professor (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 USA (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, S. Korea School of Biological Sciences, Seoul National University, Seoul 08826, S. Korea (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (1)
Cornell University (1)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Department of Biochemistry and Molecular Biology College of Medicine, National Taiwan University, Taipei, Taiwan (1)
Department of Chemistry, Korea University, Seoul 02841, Republic of Korea (1)
Department of Life Science, National Taiwan University (1)
Department of Medical Laboratory Science and Biotechnology, College of Medicine, National Cheng Kung University, Tainan, Taiwan. (1)
Department of New Biology, DGIST (1)
Department of Pediatrics Medizinische Fakultät Carl Gustav Carus Technische Universität Dresden 01307 Dresden, Germany (1)
Department of Pharmacology, University of California, San Diego, La Jolla, CA 92037, USA. (1)
Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA (1)
Genomics Research Center, Academia Sinica (1)
Genomics Research Center, Academia Sinica, Taipei, Taiwan (1)
Genomics Research Center, Academia Sinica, Taipei, Taiwan. Drug Development Center, China Medical University, Taichung, Taiwan. Department of Biological Chemistry, University of California, Irvine. (1)
Group for Biometrology, Korea Research Institute of Standards and Science (KRISS), Daejeon, 34113, Republic of Korea (1)
Harold C. Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA (1)
Immune Synapse and Cell Therapy laboratory, Gwangju institute of science and technology (GIST), South Korea (1)
Institute for Basic Science and Seoul National University (1)
Institute of Biochemistry and Molecular Biology, National Taiwan University College of Medicine (1)
Institute of Biomedical Science, Academia Sinica (1)
Korea Research Institute of Chemical Technology (1)
L7235, Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
Lineberger Comprehensive Cancer Center Department of Pharmacology UNC Chapel Hill Chapel Hill NC USA (1)
Master program for clinical pharmacogehomics and pharmacoprotemics Chia-Li Han LAB.Taipei (1)
National Taiwan University Hispital (1)

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C1 metabolism in Corynebacterium glutamicum: an endogenous pathway for oxidation of methanol to carbon dioxide

Methanol is considered as an interesting carbon source in biobased microbial production processes. As Corynebacterium glutamicum is an important host in industrial biotechnology, in particular for amino acid production, we performed studies on the response of this organism to methanol. C. glutamicum...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2013-09-27 | E-GEOD-49936 | biostudies-arrayexpress

Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates

Background. Many microbial hosts used for the rapid discovery and development of metabolic pathways can have sensitivities to final products and process reagents. Isopentenol, a biogasoline candidate, has an established heterologous gene pathway but is toxic to many microbial hosts. Reagents used in...

ORGANISM(S): Corynebacterium Glutamicum Atcc 13032

PXD012293 | panorama

L-Glutamine metabolism and its regulation in C. glutamicum

Corynebacterium glutamicum, a gram-positive soil bacterium used for the industrial production of amino acids such as L-glutamate and L-lysine, is able to use a number of different nitrogen sources, such as ammonium, urea, or creatinine. In this communication, we show that L-glutamine serves as an ex...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2010-10-05 | E-GEOD-19779 | biostudies-arrayexpress

First use of molecular evidence to match sexes in the Monstrilloida (Crustacea: Copepoda), and taxonomic implications of the newly recognized and described, partly Maemonstrilla-like females of Monstrillopsis longilobata Lee, Kim & Chang, 2016.

Not available

S-EPMC6004111 | biostudies-literature

Adaptive evolution of Corynebacterium glutamicum resistant to oxidative stress and its global gene expression profiling

Corynebacterium glutamicum was adapted in a chemostat for 1,900 h with gradually increasing H2O2 stress to understand the oxidative stress response of an industrial host. After 411 generations of adaptation, C. glutamicum developed the ability to grow under stress of 10 mM H2O2, whereas the wild-typ...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2013-01-06 | E-GEOD-41232 | biostudies-arrayexpress

Genetic effect of interleukin-1 beta (C-511T) polymorphism on the structural covariance network and white matter integrity in Alzheimer's disease.

Not available

S-EPMC5242022 | biostudies-literature

Down-regulation of ATF1 leads to early neuroectoderm differentiation of human embryonic stem cells by increasing the expression level of SOX2.

Not available

S-EPMC6704446 | biostudies-literature

Lipid Paradox in Statin-Naive Acute Ischemic Stroke But Not Hemorrhagic Stroke.

Not available

S-EPMC6124481 | biostudies-literature

Transcription profiling of Corynebacterium glutamicum shows a differential response to moderate or severe heat shock of the HrcA- and HspR-dependent systems

Genome-wide transcription profiles analysis of the heat-shocked wild-type strain under moderate (40¡C) and severe heat stress (50¡C) revealed that a large number of genes are differentially expressed after heat shock. 358 genes were up-regulated and 420 were down-regulated in response to moderate he...

ORGANISM(S): Corynebacterium glutamicum

2008-12-10 | E-MTAB-66 | biostudies-arrayexpress

Characterization of Methicillin-Resistant Staphylococcus aureus Isolates from Periprosthetic Joint Infections.

Not available

S-EPMC9316792 | biostudies-literature

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